2017 Synthetic Biology: Engineering, Evolution & Design (SEED)

Session: Confirmed Posters

Presentations

Managing Data with the Experiment Data Depot
William Morrell, Mark Forrer, Garrett Birkel, Nathan J Hillson, Hector Garcia-Martin, Teresa Lopez, Tyler Backman, Christopher J. Petzold, Edward Baidoo, David Ando, Zak Costello, Ian Vaino
Leucine Zipper-Mediated Targeting of Multi-Enzyme Cascade Reactions to Inclusion Bodies in Escherichia coli for Enhanced Production of 1-Butanol 
Dae-Hee Lee, Gui Hwan Han, Seung-Goo Lee
Global Analysis of Promoter Architecture in E. coli
Guillaume Urtecho, Kimberly Insigne, Sriram Kosuri
DNA Construction Using DIVA (Design, Implementation, Validation Automation): Wet-Lab Workflows and Software Platform
Nurgul Kaplan, Garima Goyal, Jennifer Chiniquy, Hector Plahar, Joanna Chen, Manjiri Tapaswi, Nina Stawski, Lisa Simirenko, Samuel Deutsch, Joel M. Guenther, Nathan J Hillson
Automated Technologies for Synthetic Biology Applications
Steve C. C. Shih, Hugo Sinha, James Perry, Ehsan Moazami
Why Doesn’t Everyone Do Everything? the Cooperation Conundrum of Engineered Consortia for the Catabolism of Phosphotriester Pesticides
Dan Kehila, Nobu Tokuriki
CRISPR Enabled Trackable Genome Engineering for Isopropanol Production in Escherichia coli
Liya Liang, Rongming Liu, Andrew Garst, Thomas Lee, Violeta Sànchez i Nogué, Gregg Beckham, Ryan T. Gill
The Sweet Smell of Biocatalysis: Using Synthetic Biochemistry for the in Vitro production of Biofuels and Commodity Chemicals
Tyler Korman
Inventory of Composable Elements (ICE): Web of Registries
Hector Plahar, Leanne Springthorpe, Nathan J Hillson, Elena Aravina
Acoustic Reporter Genes for Non-Invasive Deep Tissue Imaging of Engineered Cells
Arash Farhadi, Raymond W. Bourdeau, Gabrielle Ho, Audrey Lee-Gosselin, Anupama Lakshmanan, Sripriya Kumar, Suchita P. Nety, Mikhail Shapiro
Understanding and Improving Osmotolerance in Caldicellulosiruptor Bescii through Screening and Metabolic Engineering of Selected Transcription Factors
Kyle Sander, Daehwan Chung, Brian H. Davison, Janet Westpheling, Steven Brown
Computational Design of Synthetic Co-Transcriptional RNA Elements for the Dynamic Regulation of Gene Expression
David W. Sparkman-Yager
Assemblx: A User-Friendly Toolkit for Rapid and Reliable Multi-Gene Assemblies
Fabian Machens, Lena Hochrein, Katrin Messerschmidt, Bernd Mueller-Roeber, Karina Schulz, Juergen Gremmels
Molecular Genetic Characterization of Terreic Acid Pathway in Aspergillus Terreus
Weiwen Sun, Chunjun Guo, Clay Wang
Coral: Python Abstractions for Genetic Design
Nicholas Bolten
Developing HIV-1 Vaccine through a Synthetic Biology Approach
Nanxi Wang, Zhe Yuan, Wei Niu, Qingsheng Li, Jiantao Guo
Synthetic Decoupling of Transcription and Translation Processes for the Quality Control of Gene Expression in Escherichia coli
Sang Woo Seo, Jina Yang
A Massively Parallel Assay for Studying 5' UTR Dependent Translation Regulation in Mammalian Cells
Georg Seelig, Paul Sample, Ban Wang
RNA-Aptamer Sensors for Phenotype Screening of Engineered Microbial Pathways
Cassandra Burke, James Carothers
SWEET Biosensors for Sugar Transport
Lily Cheung, Wolf Frommer
Saturation Mutagenesis of E. coli Sigma Factor As a Tool for Strain Engineering
Harris H. Wang, Jimin Park
Modifying the Cell Surface Carbohydrate Code: From the Evolution of Enzyme Tools for Blood Antigen Removal to the Discovery of Drugs Aimed at Enzyme Targets in Cancer
David H. Kwan
Elementary Mode Analysis of the Effect of Redox Balance over H2 Production in Rhodopseudomonas Palustris
Alexis Saldivar-García, R Axayacatl Gonzalez-Garcia, Edgar Salgado Manjarrez, Elvia I. García-Peña
A Serine Integrase-Based ‘Landing Pad’ System for Chromosomal Integrations of Heterologous Genes in E. coli
Richard Clubbe
Data Rich Strategies for Designing Cellular RNA Devices
Joy S. Xiang
Efficient Engineering of Ribosome Binding Site Libraries in Mismatch Repair Proficient E. coli
Sabine Oesterle, Sven Panke, Daniel Gerngross, Tania Michelle Roberts, Steven Schmitt
High-Throughput Mutagenesis of Multiple Components of the Yeast Mating Pathway
Stephanie Zimmerman, Michael W. Dorrity, Josh Cuperus, Stanley Fields, Christine Queitsch
Ancestral Reconstruction of LacI/GalR Transcriptional Regulators
Matthew Spence, Joe Kaczmarski, Colin J. Jackson
Evolution of Chalcone Isomerase from a Non-Enzymatic Ancestor
Miriam Kaltenbach, Jason R. Burke, Joseph P. Noel, Dan Tawfik, Caroline L. Kamerlin, Asaph Aharoni
Rational Design of Ribozyme Switches through Big Data and Machine Learning
Calvin M. Schmidt, Christina D. Smolke
Immuno-Reprograming of the Tumor Microenvironment Using Synthetic Biotics
Adam Fisher, Vincent Isabella, Kip West, Katherine Walsh, Mary Castillo, Binh Ha, Ashley Knight, Yves Millet, Jose Lora, Paul Miller, Cami Anderson
Optimizing the Violacein Biosynthetic Pathway Using Droplet Microfluidics
Philip Gach, Nathan J Hillson, Paul D. Adams, Anup K Singh, Jay Keasling, Samuel Deutsch, Sangeeta Nath, Nurgul Kaplan, Manasi Raje
In Vivo Activation of Apo-Hydrogenases Using Synthetic Analogues of Its Active Site in E.coli
Namita Khanna, Livia Meszaros, Charlene Esmieu, Gustav Berggren, Peter Lindblad
Controlling Bdellovibrio Bacteriovorus Gene Expression and Predation Using Synthetic Riboswitches
Mohammed Dwidar, Yohei Yokobayashi
AT-Rich Gene Synthesis
Matthew Walsh, Jacquin Niles, Peter A. Carr, Nicholas Guido
Probing Enzyme Sequence-Function Relationships By Deep Mutational Scanning of Two Enzyme Homologs
John Chen, Ray Socha, Benjamin E. Life, Nobu Tokuriki, Douglas Fowler
Expression of Heterologous Sigma Factor Expands the Searchable Space for Biofuel Tolerance Mechanisms
Timothy Tomko, Mary J. Dunlop
Engineered Strains of the Unicellular Cyanobacterium Synechocystis PCC 6803 Containing Multiple Copies of Phosphoenolpyruvate Carboxylase
Claudia Durall de la Fuente
Paper-Based Detection with Synthetic Gene Circuits
Matthew Lux
Metagenomic Mining of Natural Prokaryotic Regulatory Elements for Construction of of Trans-Species Genetic Circuits
Nathan Johns, Harris H. Wang, Antonio Gomes
Establishing a Dual Channel System for Ratiometric Characterisation in Bacillus Subtilis Across Conditions and Gene Contexts
Haydn J. King
Rational Mutagenesis to Enable Yeast DNA Polymerase ? (POL3) Tobecome a Calcium-Sensitive Recording Device
Keith Tyo, Namita Bhan, Alexandra de Paz, Ted Cybulski, Bradley W. Biggs
Attempts to Develop an Enzyme Converting R-2,3-Dihydroxyisovalerate to 2-Ketoisovalerate with the Aid of Computational Protein Design
Stephen L. Mayo, Kenji Oki, Frederick S. Lee
Deep Mutational Scanning of NDM-1: Reverse Engineering Antibiotic Resistance to Decode the Protein Sequence and Function Relationship
John Chen, Ray Socha, Nobu Tokuriki, Benjamin E. Life, Douglas Fowler
Steps Towards CRISPR-Based Process Control in a Cell-Free System
Colin Maxwell, Chase L. Beisel, Julius B. Lucks, Vincent Noireaux
Development of a Fast-Responding, Minimal Equipment Biosensor for Zinc Deficiency
Monica McNerney, Mark Styczynski
Using Yeast to Identify Peptides That Regulate Human Oncogenic Transcription Factors
Chi-Fang Wu, John Koschwanez
Developing Synthetic Biology Capabilities in the Fast-Growing Bacterium Vibrio Natriegens
Tanya Tschirhart, Zheng Wang, Jeffrey Erickson, Gary Vora
Inducible Genome Modification Utilizing Engineered Ty1 Retrotransposons in Saccharomyces Cerevisiae
Xiao Wang, Kylie Standage-Beier, Brandon Dorr
Molecular and Engineering Design Concept of  Bacterial Surface Antigen( Fimbriae) Involved in Cancer Therapy
PROF. Nitosh Kumar Brahma