2017 Synthetic Biology: Engineering, Evolution & Design (SEED)

Session: Confirmed Posters

Presentations

Development of a Conjugation-Based Genome Editing Tool in Shewanella Oneidensis MR-1 Using CRISPR/Cas9 and Recombineering
Anna Domènech Corts, Ryan T. Gill, Jeffrey A. Gralnick
A Model-Driven Approach to Improving Cooperativity and Reducing Toxicity of dCas9 Logic Circuits
Daniel A. Anderson, Shuyi Zhang, Christopher A. Voigt
Overcoming the Membrane Barrier: Recruitment of ?-Glutamyl Transferase for Intracellular Release of Cargo Molecules
Tilmann Kuenzl, Sven Panke, Philippe Marlière, Piet Herdewijn, Puneet Srivastava, Magdalena Sroka
Structural Basis for the Enantioselectivity of Est-Y29 Toward (S)-Ketoprofen
Changsuk Oh, Tri Duc Ngo, Kyeong Kyu Kim
Active Degradation Allows for Increased Information Transmission Rate in Genetic Control
Nicholas A. Rossi, Mary J. Dunlop
Development of a Xylose Utilizing Saccharomyces Cerevisiae As a Platform for Lignocellulosic Biofuels/Biochemical Production
Sun-Mi Lee, Phuong Hoang Nguyen Tran
Genetic Tool Development for Nannochloropsis species
Anne Ruffing, Jordan McEwen, Lucas Strickland
Characterizing the Role of 23S rRNA Peptidyltransferase Center Nucleotides in Translation
Anne d'Aquino, Michael C. Jewett, Tasfia Azim
RNA-Guided Microbial Genome Editing Using Group II Introns and CRISPR-Cas Systems
Zhigang Zhang, Caitlin H. McCann, Gregory D. Davis, Erik R. Eastlund
Engineered Control Systems for Asymmetric Cell Division in Synthetic Bacteria
Sara Molinari, David L. Shis, Oleg Igoshin, Matthew R. Bennett
Pbnj Gibson Cloning for Fast Turn-Around Donor Constructs in Gene-Editing Applications
Intisar K. Turner, Christine Chen
Adaptive Landscapes and Molecular Basis for the Functional Innovation of an Organophosphate Hydrolysing Enzyme
Nobu Tokuriki, Colin J. Jackson, Florian Baier, Gloria Yang, Erich Bornberg-Bauer, Elias Dohmen, Dave Anderson
Engineering Bacterial S-Layer Protein Arrays to Generate Hybrid Nanomaterials
Francesca Manea, Caroline Ajo-Franklin
Spatial Patterning of Microbial Consortia in Microfluidic Devices
Razan Alnahhas, Andrew Hirning, Matthew R. Bennett
Composition and Prediction of Multi-Input Promoters
David Zong, Matthew R. Bennett, William Ott, Chinmaya Gupta
An E coli whole Genome Mutant Library Enables Rapid Selection for Improved Fitness Under Diverse Stresses
Alaksh Choudhury, Zhiwen Wang, Dr. Ryan T. Gill, Joel L. Kaar
Controlling Energy Flow in Bacteria Using Engineered Ligand-Responsive Protein Electron Carriers
Jonathan J. Silberg, Joshua T. Atkinson, Ian J. Campbell, George N. Bennett, Jacob Torres
Vectoreditorjs: An Open-Source Web-Based Javascript Application for DNA Sequence Visualization, Annotation, and Editing
Sarah LaFrance, Leanne Springthorpe, Hector Plahar, Jacob Coble, Thomas Rich, Nathan J Hillson, Joshua Nixon
Managing Data with the Experiment Data Depot
William Morrell, Mark Forrer, Garrett Birkel, Nathan J Hillson, Hector Garcia-Martin, Teresa Lopez, Tyler Backman, Christopher J. Petzold, Edward Baidoo, David Ando, Zak Costello, Ian Vaino
DNA Construction Using DIVA (Design, Implementation, Validation Automation): Wet-Lab Workflows and Software Platform
Nurgul Kaplan, Garima Goyal, Jennifer Chiniquy, Hector Plahar, Joanna Chen, Manjiri Tapaswi, Nina Stawski, Lisa Simirenko, Samuel Deutsch, Joel M. Guenther, Nathan J Hillson
CRISPR Enabled Trackable Genome Engineering for Isopropanol Production in Escherichia coli
Liya Liang, Rongming Liu, Andrew Garst, Thomas Lee, Violeta Sànchez i Nogué, Gregg Beckham, Ryan T. Gill
Acoustic Reporter Genes for Non-Invasive Deep Tissue Imaging of Engineered Cells
Arash Farhadi, Raymond W. Bourdeau, Gabrielle Ho, Audrey Lee-Gosselin, Anupama Lakshmanan, Sripriya Kumar, Suchita P. Nety, Mikhail Shapiro
Assemblx: A User-Friendly Toolkit for Rapid and Reliable Multi-Gene Assemblies
Fabian Machens, Lena Hochrein, Katrin Messerschmidt, Bernd Mueller-Roeber, Karina Schulz, Juergen Gremmels
Developing HIV-1 Vaccine through a Synthetic Biology Approach
Nanxi Wang, Zhe Yuan, Wei Niu, Qingsheng Li, Jiantao Guo
RNA-Aptamer Sensors for Phenotype Screening of Engineered Microbial Pathways
Cassandra Burke, James Carothers
Biosensor Expansion Out of an Ancient Evolutionary Cul-de-Sac
Jared W. Ellefson, Andrew D. Ellington, Michael P. Ledbetter
Applying Synthetic Biology to Synthesize Functional Materials
Andrea Wallace, Christopher A. Voigt
Rational Design of Ribozyme Switches through Big Data and Machine Learning
Calvin M. Schmidt, Christina D. Smolke
Controlling Bdellovibrio Bacteriovorus Gene Expression and Predation Using Synthetic Riboswitches
Mohammed Dwidar, Yohei Yokobayashi
Engineered Strains of the Unicellular Cyanobacterium Synechocystis PCC 6803 Containing Multiple Copies of Phosphoenolpyruvate Carboxylase
Claudia Durall de la Fuente
Rational Mutagenesis to Enable Yeast DNA Polymerase ? (POL3) Tobecome a Calcium-Sensitive Recording Device
Keith Tyo, Namita Bhan, Alexandra de Paz, Ted Cybulski, Bradley W. Biggs
Development of a Fast-Responding, Minimal Equipment Biosensor for Zinc Deficiency
Monica McNerney, Mark Styczynski
Molecular and Engineering Design Concept of  Bacterial Surface Antigen( Fimbriae) Involved in Cancer Therapy
PROF. Nitosh Kumar Brahma
Effects of Overexpressing Calvin-Bassham-Benson Cycle Genes in Synechocystis PCC 6803
Feiyan Liang, Peter Lindblad
Reprogramming Yeast Mating to Characterize Protein-Protein Interactions in High-Throughput
David Younger, Stephanie Berger, David Baker, Eric Klavins
Engineering Synthetic Proteins to Generate Ca2+ Signals in Mammalian Cells
Anam Qudrat, Kevin Truong
Engineered Proteins Program Mammalian Cells to Target Tnf? Sources
Anam Qudrat, Kevin Truong, Abdullah Mosabbir
Measurements of Translation Initiation from All 64 Codons in E. coli
Ariel Hecht, Jeff Glasgow, Paul Jaschke, Lukmaan A. Bawazer, Matthew S. Munson, Jennifer R. Cochran, Drew Endy, Marc Salit
Understanding and Manipulating Chromosomal-Scale DNA Looping in Escherichia coli
Nan Hao, Keith E. Shearwin, Ian B. Dodd
Efficient Engineering of Ribosome Binding Site Libraries in Mismatch Repair Proficient E. coli
Sabine Oesterle, Sven Panke, Daniel Gerngross, Tania Michelle Roberts, Steven Schmitt
Naringenin-Responsive Riboswitch-Based Fluorescent Biosensor Module for Escherichia coli Co-Cultures
Yu Xiu, Sungho Jang, J. Andrew Jones, Robert J. Linhardt, Qipeng Yuan, Mattheos Koffas, Gyoo Yeol Jung, Nicholas A. Zill
Systems and Synthetic Biology of Rhodococcus Opacus to Enable Conversion of Lignin-Derived Aromatic Compounds into Lipids
William R. Henson, Drew DeLorenzo, Austin Rottinghaus, Tae Seok Moon
A Versatile Toolbox for the Control of Protein Levels Using N?-Acetyl-Lysine Dependent Amber Suppression
Wolfram Volkwein, Christopher Maier, Ralph Krafczyk, Kirsten Jung, Jürgen Lassak
Directed Combinatorial Mutagenesis of Escherichia coli for Complex Phenotype Engineering
Ryan T. Gill, Alaksh Choudhury, Gregg Beckham, Rongming Liu, Liya Liang, Violeta Sànchez i Nogué, Andrew Garst
Mining the Human Microbiome: Natural Product Discovery from (meta)Genomic Data
Fang-Yuan Chang, Jon Clardy, Michael Fischbach, Christopher A. Voigt
Syntrack 2: A Scalable, Automated DNA Assembly Production Workflow Management
John Meng, Angela Tarver, Matthew Hamilton, Robert Evans, Nathan J Hillson, Jan-Fang Cheng, Samuel Deutsch, Lisa Simirenko
Deep Device Mining for Carbohydrate-Active Enzymes in Pulp and Paper Mill Sludge Metagenome and Applications to Bioprocess Development
Anupama A. Sharan, Vikramaditya G. Yadav, Steven J. Hallam
Engineering the Cyanobacterium Synechocystis Sp. PCC 6803 Towards Optimized Solutions for Future Biotechnological Applications
Csaba István Nagy, Eva-Mari Aro, Pauli Kallio, Pekka Patrikainen, Kati Thiel, Hariharan Dandapani, Edita Mulaku, Lauri Kakko
Amplifying Riboswitch Signal Output Using Cellular Wiring
Michael Goodson, Annastacia Bennett, Nancy Kelley-Loughnane, Svetlana Harbaugh
Synthetic Gene Networks for 2D Fractal Formation By S. Cerevisiae
Georgios Pothoulakis, Tom Ellis