2017 Synthetic Biology: Engineering, Evolution & Design (SEED)

Session: Confirmed Posters

Presentations

Cloning, Expression and Characterization of a Self-Sufficient Cytochrome P450 Monooxygenase from Bacillus Species
Hemraj Rimal, Bikash Dangi, Tae-jin Oh
Computational Design of Self-Assembling Protein Nanomachines
Alexis Courbet, Kathy Wei, Una Nattermann, Adam Moyer, Yang Hsia, George Ueda, Jorge Fallas, Scott Boyken, Zibo Chen, Chunfu Xu, Luis Ceze, Tom Daniel, Joshua Smith, Phil Bradley, David Baker, Ariel Ben-Sasson, Ivan Vulovic
Quantitative Modeling of Integrase Dynamics Using a Novel Python Toolbox for Parameter Inference
Anandh Swaminathan, Victoria Hsiao, Richard M. Murray
Effects of Overexpressing Calvin-Bassham-Benson Cycle Genes in Synechocystis PCC 6803
Feiyan Liang, Peter Lindblad
An Accelerated Evolution Approach to Produce Next Generation Yeast Strains for Protein Discovery and Production
Sophie Comyn, Yann Mathieu, Jose Celedon, Harry Brumer, Joerg Bohlmann, Nobuhiko Tokuriki, Thibault Mayor
Synthetic Biology Memory Circuits in Non-Traditional Hosts
Nymul E. Khan, Hans C. Bernstein, Enoch Yeung, George Bonheyo
Exploiting a Soil Bacterium for the Sustainable Production of High-Value Lipids
Lindsay D. Eltis, Raphael Roccor, James Round
Reprogramming Yeast Mating to Characterize Protein-Protein Interactions in High-Throughput
David Younger, Stephanie Berger, David Baker, Eric Klavins
Engineering Insulation between Synthetic Bacterial Signaling Pathways
Conor McClune, Michael Laub, Christopher A. Voigt
Mapping the Genomic Landscape of CRISPR-Cas9 Cleavage
Scott Gradia
Biodevisor: Automated Refactoring of Biosynthetic Gene Clusters
Ernst Oberortner, Samuel Deutsch, Michalis Hadjithomas
Engineering Synthetic Proteins to Generate Ca2+ Signals in Mammalian Cells
Anam Qudrat, Kevin Truong
Innovative Technology to Produce the Building Blocks for Ambroxide
Grace Park
Functional Robustness of Synthetic Gene Circuits Under Mutation Pressure
Joo-Young Lee, Kyung Hyuk Kim
Repressing Integrase Attachment Site Operation with CRISPR-Cas9 in E. coli
Andrey Shur, Richard M. Murray
Engineered Proteins Program Mammalian Cells to Target Tnf? Sources
Anam Qudrat, Kevin Truong, Abdullah Mosabbir
A CRISPR/Cas9 Genome Engineering Toolbox for Systems Metabolic Engineering of Yeast
Rene Verwaal, Nathalie Buiting-Wiessenhaan, Brenda Vonk, Johannes A. Roubos
Phoenix: A Systems Engineering Approach to Spatial and Temporal Pattern Synthesis in Genetic Systems
Curtis Madsen, Evan Appleton, Prashant Vaidyanathan, Alan Pacheco, Cristian-Ioan Vasile, Iman Haghighi, Rizki Mardian, Nicholas Roehner, Calin Belta, Douglas Densmore
Improving Electron Transfer in Cytochrome C-Expressing Escherichia coli by Modulating Cytochrome C Maturation
Lin Su, Caroline Ajo-Franklin, Moshe Baruch, Jose Cornejoa, Tatsuya Fukushimaa
Measurements of Translation Initiation from All 64 Codons in E. coli
Ariel Hecht, Jeff Glasgow, Paul Jaschke, Lukmaan A. Bawazer, Matthew S. Munson, Jennifer R. Cochran, Drew Endy, Marc Salit
A Mechanism for Oscillations in Co-Repressive Microbial Consortia
Mehdi Sadeghpour, Alan Veliz-Cuba, Gabor Orosz, Krešimir Josi?, Matthew R. Bennett
Cas9 Activity in Human Chromatin: Inhibition and Strategies for Increased Efficiency
Rena Daer, Karmella Haynes, Cassandra Barrett
Quantifying Noise Correlations in the Multiple Antibiotic Resistance (Mar) Network
Imane El Meouche, Nicholas A. Rossi, Mary J. Dunlop
Understanding and Manipulating Chromosomal-Scale DNA Looping in Escherichia coli
Nan Hao, Keith E. Shearwin, Ian B. Dodd
An Engineered Pyrrolysyl tRNA Synthetase for In Vivo Measurement of Sense Codon Reassignment in E. coli
David Schwark, Margaret A. Schmitt, John D. (Nick) Fisk
Engineering Microbial Utilization of Pectin-Rich Biomass for Producing Commodity Chemicals
Ryan Protzko, John Dueber
Engineering Whole Cell Biocatalysts for Consolidated Bioprocessing 
Kateryna Ievdokymenko, Tamar Av-Shalom, David Goertsen, Jewel Ocampo, Meghan Verstraete, Steven J. Hallam, John K. Smit
Applying Synthetic Biology to Synthesize Functional Materials
Andrea Wallace, Christopher A. Voigt
Dissecting the Factors That Determine the Fidelity of the Genetic Code through Sense Codon Reassignment
John D. (Nick) Fisk, Margaret A. Schmitt, David Schwark
An Automated Flow-Based/Digital Microfluidic Platform with on-Chip Optical Detection System for High-Throughput Gene Editing Processes
Kosuke Iwai, Philip Gach, Peter W. Kim, Manasi Raje, Joshua Heinemann, Todd A. Duncombe, Kai Deng, Trent Northen, Nathan J Hillson, Paul D. Adams, Anup K. Singh
Exploring the Evolution of Ahl Lactonases
Nobu Tokuriki, Jordan Williams-Yuen
Naringenin-Responsive Riboswitch-Based Fluorescent Biosensor Module for Escherichia coli Co-Cultures
Yu Xiu, Sungho Jang, J. Andrew Jones, Robert J. Linhardt, Qipeng Yuan, Mattheos Koffas, Gyoo Yeol Jung, Nicholas A. Zill
Effective Miniaturization of Illumina Nextera XT Library Preparation for Small Whole Genome Sequencing By Utilizing the Labcyte Echo 525® Liquid Handler
Jefferson Lai, John Lesnick, Noel Ruppert
Monitoring Microbial Genetic Circuits in Soils Using Orthogonal Enzymes That Synthesize Volatile Metabolites
Jonathan J. Silberg, Hsiao-Ying Cheng, Caroline A. Masiello, Ilenne Del Valle, Dongkuk Huh
Multiplex Gene Synthesis in Emulsions
Calin Plesa, Sriram Kosuri, Nathan B. Lubock, Angus Sidore, George M Church, Di Zhang
Systems and Synthetic Biology of Rhodococcus Opacus to Enable Conversion of Lignin-Derived Aromatic Compounds into Lipids
William R. Henson, Drew DeLorenzo, Austin Rottinghaus, Tae Seok Moon
A Genetic Switch for Stable, Long-Term Fermentative Production of Anabolic Products in Yeast
Penelope Chua, Adam Meadows, Hanxiao Jiang
Bistable Switches for Yeast Population Growth Designed on Predictions from a Toolkit of Cell Division Regulators
Alberto Carignano, Laura Adam, Orlando de Lange, Eric Klavins
Introducing Catalysis into Non-Catalytic Protein Folds: How Nature Does It
Joe Kaczmarski, Ben Clifton, Colin J. Jackson, Paul Carr, Nobu Tokuriki
A Versatile Toolbox for the Control of Protein Levels Using N?-Acetyl-Lysine Dependent Amber Suppression
Wolfram Volkwein, Christopher Maier, Ralph Krafczyk, Kirsten Jung, Jürgen Lassak
RNA Regulators of Gene Expression for High-Throughput Strain Engineering
Cameron J. Glasscock, Julius B. Lucks
Rapid Identification and Quantitative Assessment of Plant Enhancers in Full-Genome Libraries
Michael W. Dorrity
Engineering Microbial Consortia Using Fosmid Pool Selection
Kateryna Ievdokymenko, Steven J. Hallam
Directed Combinatorial Mutagenesis of Escherichia coli for Complex Phenotype Engineering
Ryan T. Gill, Alaksh Choudhury, Gregg Beckham, Rongming Liu, Liya Liang, Violeta Sànchez i Nogué, Andrew Garst
High Quality, Error-Free DNA for Genome Engineering and Constructing Genetic Circuits for Cell-Free Systems
Benjamin P. Steil, Evelyn Eggenstein, Jean-Marie Rouillard
CRISPR NAND Gate: rescuing a cis-repressed gRNA using antisense sRNA
Pascoe J Harvey, Susan J. Rosser
A Quorum-Busting Approach to Microbiome Engineering
Mario T. Treviño González, Jose Ruben Morones, Selene Sepúlveda Guzmán
Mining the Human Microbiome: Natural Product Discovery from (meta)Genomic Data
Fang-Yuan Chang, Jon Clardy, Michael Fischbach, Christopher A. Voigt
Recent Breakthroughs in Enabling Technologies Platforms for Wheat
Palak Kathiria, Jeremie Diedhiou, Kimberly Burton-Hughes, Harpinder Randhawa, Elizabeth Marillia
Mammalian Cells Seek CSF1 Sources Via Engineered Proteins
Anam Qudrat, Kevin Truong