2016 Synthetic Biology: Engineering, Evolution & Design (SEED)

Session: Accepted Posters

Presentations

Developing an in Vitro Platform for the Production of Structurally Homogeneous Glycoproteins Using Cell-Free Protein Synthesis and Samdi Mass Spectrometry
Weston K. Kightlinger, Michael C. Jewett, Jose-Marc Techner, Liang Lin
Engineering Red Blood Cell-Based Biosensors for Physiological Monitoring
Taylor Dolberg, Joshua Leonard
Effects of Resource Sharing on Gene Expression Dynamics
Patrick M. Caveney, Michael L. Simpson, Charles Chin, Charles P. Collier, Scott T. Retterer
Optimized Genetic Tools and Overexpression Strategies in the Development of Efficient Production Systems in Photosynthetic Cyanobacteria
Csaba István Nagy, Pauli Kallio, Eva-Mari Aro, Kati Thiel, Hariharan Dandapani, Pekka Patrikainen
Evolving Strand-Displacing Polymerases with Isothermal CSR
Andrew D. Ellington, John N. Milligan
Arrowland: A Browser-Based Environment for Omics Mapping and Simulation
Garrett Birkel, Hector Garcia-Martin, William Morrell, Nathan J Hillson
Cell-Free Platform for Natural Product Discovery
Stephen Heinsch, Michael J. Smanski
Improving RNA Regulator Dynamic Range with Dual Transcriptional Translational Control Mechanism
Alexandra Westbrook
Self-Selection Using Artificial Networks: An Adaptive Tool for Directed Evolution
Adèle Dramé-Maigné, Yannick Rondelez, Teruo Fujii, Daisuke Kiga, Kazuaki Amikura
Functional Reconstitution of a Pyruvate Dehydrogenase in the Cytosol of Saccharomyces Cerevisiae through Lipoylation Machinery Engineering
Huimin Zhao
A Droplet Microfluidic Platform for Automating Genetic Engineering
Philip Gach, Steve C. C. Shih, Nathan J Hillson, Paul D. Adams, Anup K. Singh
Accelerating Genome Engineering in E. coli: From Single Step Pathway Integration to Trackable Genomic Diversity
Marcelo Bassalo, Andrew Garst, Ryan T Gill
Universal Expression Tools to Improve Nutrient Acquisition of Energy Crops
Nasim Mansoori, Carlos Hernandez-Garcia, Fabrice Masson, Garima Goyal, Sangeeta Nath, Nathan J Hillson, Samuel Deutsch
Engineering Insulation Between Synthetic Bacterial Signaling Pathways
Conor McClune, Michael Laub
Deep Sequencing-Based Protein Engineering to Optimize Functional Enzyme Expression in Synthetic Metabolic Pathways
Justin Klesmith
Rational Membrane Engineering Increases E. coli Robustness and Production of Biorenewables
Zaigao Tan, David R. Nielsen, Jacqueline V. Shanks, Yingxi Chen, William Black, Jeremy Lombardo
Increasing Extracellular Nitrogen Production By Azotobacter Vinelandii dj
Carolann M. Knutson, Brett M. Barney
Engineered, Evolved, and Re-Engineered Yeast for Producing Cellulosic Biofuels
Improving Genomically Recoded Escherichia coli for the Production of Proteins Containing Non-Standard Amino Acids
Jessica Perez, Erik D. Carlson, Michael C. Jewett, Oliver Weisser
Automated Design for Synthesis and Assembly
Ernst Oberortner, Nathan J Hillson, Samuel Deutsch, Jan-Fang Cheng
Delineating the Mechanisms of Quorum Sensing Cross-Talks By Coupling Activation and Repression
Suhyun Kim, David Lips, Pamela A. Silver
Evolutionarily Identified Biological Design Allowing Simultaneous Sugar Utilization in Yeast
Stephan Lane, Haiqing Xu
Definition and In Vivo Evaluation of Mathematical Models to Predict the Effects of Copy Number Variations and Cell Burden in Interconnected Synthetic Circuits
Susanna Zucca, Lorenzo Pasotti, Michela Casanova, Ilaria Massaiu, Massimo Bellato, Matteo Arbuschi, Michela Murgiano, Alberto Serra, Gabriella Cusella, Paolo Magni
Functional Coordination of Iron-Sulfur Clusters by Selenocysteine
Corwin Miller, Dieter Söll, Markus Broecker, Joanne Ho
DNA Origami Sensor That Controls Gene Expression
Reza M. Zadegan, William L. Hughes
A Cell-Free Framework for Rapid Biosynthetic Pathway Prototyping and Enzyme Discovery
Ashty Karim, Michael Jewett
A Combinatorial Assembly Pipeline for Gene Expression in Mammalian Cells
Christopher Stach, Michael J. Smanski
Watching the Ribosome Making Peptide Bonds Between Unnatural Amino Acids
Sergey Melnikov, Dieter Söll
Design of a Minimized pT181 Attenuator Using Shape-Seq
Alexander Settle, Jane Liao, Ruize Zhuang
Easyclone-Markerfree: A Vector Toolkit for Marker-Less Integration of Genes into Saccharomyces Cerevisiae
Mathew jessop Fabre, Vratislav Stovicek, Tadas Jakociunas, Michael Krogh Jensen, Jay D. Keasling
Topologies of Phosphorylation Cycles As Insulation Devices
Rushina Shah, Domitilla Del Vecchio
Open Vectoreditor: Freely Open-Source Javascript Web Application for DNA Visualization, Annotation, and Editing
Sarah LaFrance, Hector Plahar, Nathan J Hillson, Jacob Coble, Thomas Rich, Joshua Nixon
Pooled Assembly, Genotyping and Scoring of Diverse Genomic Libraries
Robert Egbert, Eric Yu, Adam Arkin
Towards an Engineered, Self-Sustained Microbial Ecosystem
Christian Zerfass, Joseph Christie-Oleza, Orkun S. Soyer
Bliss: The Black List Sequence Screening Pipeline
Lisa Simirenko, Nathan J Hillson, Samuel Deutsch, Jan-Fang Cheng
Mathematical Modelling Determines Post-Segregational Killing Efficacy of Toxin-Antitoxin Systems in Commensal Escherichia coli Nissle 1917
Alex J H Fedorec, Tanel Ozdemir, Chris Barnes
Using bacteria to make improved, nacre-inspired materials
Dominik T. Schmieden, Anne S. Meyer
Front Propagation in an Array of Artificial Cells
Alexandra Tayar
Library and Model Derived Synthetic Terminators for Yeast
Nicholas Morse, Hal Alper
Characterization of Bacillus Subtilis Colony Biofilms Via Mass Spectrometry and Fluorescence Imaging
Huimin Zhao, Jonathan V. Sweedler
Long-term adaptive evolution of highly recoded E. coli strains
Timothy M. Wannier, Aditya M. Kunjapur, George M Church
Rewriting the Genome Novel Tools in Synthetic Biology
Adam Clore
The Joint Genome Institute’s Synthetic Biology Internal Review Process
Nathan J Hillson, Lisa Simirenko, Miranda Harmon-Smith, Axel Visel, Edward Rubin
Syntrack: Streamline Complex DNA Assembly Processes
Samuel Deutsch, Jan-Fang Cheng, Nathan J Hillson, Lisa Simirenko, Matthew Bendall, Matthew Hamilton, Angela Tarver, John Meng
Genome-scale regulatory landscape of Escherichia coli in response to various environmental stresses
Sang Woo Seo, Bernhard O. Palsson
Rational Design of High-Number DNA Fragments for Gene Construction
Bhagyashree Birla
Engineering Synthetic Systems Inspired By Anaerobic Fungi
Sean P. Gilmore, Charles H. Haitjema, John K. Henske, Jessica A. Sexton, Michael K. Theodorou, Dave Valentine
Engineering E. coli for Dual Color Detection of 2,4,6-Trinitrotoluene
Svetlana Harbaugh, Jennifer Martin, Michael Goodson, Jenna Weinstein, Nancy Kelley-Loughnane
De novo design of a genetically encoded simple viral-like coat protein for artificial viruses
A. Hernandez-Garcia, D. Kraft, P. van der Schoot, R. de Vries
Quality and Quantity: Protein Production and Folding Using a Bacterial Protein Secretion System
Sandy Rosales, James Bevington, Elias Valdivia, Danielle Tullman-Ercek