2016 Synthetic Biology: Engineering, Evolution & Design (SEED)

Session: Accepted Posters

Presentations

Developing an in Vitro Platform for the Production of Structurally Homogeneous Glycoproteins Using Cell-Free Protein Synthesis and Samdi Mass Spectrometry
Kightlinger, W. K., Jewett, M. C., Techner, J. M., Lin, L.
Engineering Red Blood Cell-Based Biosensors for Physiological Monitoring
Dolberg, T., Leonard, J.
Effects of Resource Sharing on Gene Expression Dynamics
Caveney, P. M., Simpson, M. L., Chin, C., Collier, C. P., Retterer, S. T.
Optimized Genetic Tools and Overexpression Strategies in the Development of Efficient Production Systems in Photosynthetic Cyanobacteria
Nagy, C. I., Kallio, P., Aro, E. M., Thiel, K., Dandapani, H., Patrikainen, P.
Evolving Strand-Displacing Polymerases with Isothermal CSR
Ellington, A. D., Milligan, J. N.
Arrowland: A Browser-Based Environment for Omics Mapping and Simulation
Birkel, G., Garcia-Martin, H., Morrell, W., Hillson, N. J.
Cell-Free Platform for Natural Product Discovery
Heinsch, S., Smanski, M. J.
Improving RNA Regulator Dynamic Range with Dual Transcriptional Translational Control Mechanism
Westbrook, A.
Self-Selection Using Artificial Networks: An Adaptive Tool for Directed Evolution
Dramé-Maigné, A., Rondelez, Y., Fujii, T., Kiga, D., Amikura, K.
Functional Reconstitution of a Pyruvate Dehydrogenase in the Cytosol of Saccharomyces Cerevisiae through Lipoylation Machinery Engineering
Zhao, H.
A Droplet Microfluidic Platform for Automating Genetic Engineering
Gach, P., Shih, S. C. C., Hillson, N. J., Adams, P. D., Singh, A. K.
Accelerating Genome Engineering in E. coli: From Single Step Pathway Integration to Trackable Genomic Diversity
Bassalo, M., Garst, A., Gill, R. T.
Universal Expression Tools to Improve Nutrient Acquisition of Energy Crops
Mansoori, N., Hernandez-Garcia, C., Masson, F., Goyal, G., Nath, S., Hillson, N. J., Deutsch, S.
Engineering Insulation Between Synthetic Bacterial Signaling Pathways
McClune, C., Laub, M.
Deep Sequencing-Based Protein Engineering to Optimize Functional Enzyme Expression in Synthetic Metabolic Pathways
Klesmith, J.
Rational Membrane Engineering Increases E. coli Robustness and Production of Biorenewables
Tan, Z., Nielsen, D. R., Shanks, J. V., Chen, Y., Black, W., Lombardo, J.
Increasing Extracellular Nitrogen Production By Azotobacter Vinelandii dj
Knutson, C. M., Barney, B. M.
Engineered, Evolved, and Re-Engineered Yeast for Producing Cellulosic Biofuels
Improving Genomically Recoded Escherichia coli for the Production of Proteins Containing Non-Standard Amino Acids
Perez, J., Carlson, E. D., Jewett, M. C., Weisser, O.
Automated Design for Synthesis and Assembly
Oberortner, E., Hillson, N. J., Deutsch, S., Cheng, J. F.
Delineating the Mechanisms of Quorum Sensing Cross-Talks By Coupling Activation and Repression
Kim, S., Lips, D., Silver, P. A.
Evolutionarily Identified Biological Design Allowing Simultaneous Sugar Utilization in Yeast
Lane, S., Xu, H.
Definition and In Vivo Evaluation of Mathematical Models to Predict the Effects of Copy Number Variations and Cell Burden in Interconnected Synthetic Circuits
Zucca, S., Pasotti, L., Casanova, M., Massaiu, I., Bellato, M., Arbuschi, M., Murgiano, M., Serra, A., Cusella, G., Magni, P.
Functional Coordination of Iron-Sulfur Clusters by Selenocysteine
Miller, C., Söll, D., Broecker, M., Ho, J.
DNA Origami Sensor That Controls Gene Expression
Zadegan, R. M., Hughes, W. L.
A Cell-Free Framework for Rapid Biosynthetic Pathway Prototyping and Enzyme Discovery
Karim, A., Jewett, M.
A Combinatorial Assembly Pipeline for Gene Expression in Mammalian Cells
Stach, C., Smanski, M. J.
Watching the Ribosome Making Peptide Bonds Between Unnatural Amino Acids
Melnikov, S., Söll, D.
Design of a Minimized pT181 Attenuator Using Shape-Seq
Settle, A., Liao, J., Zhuang, R.
Easyclone-Markerfree: A Vector Toolkit for Marker-Less Integration of Genes into Saccharomyces Cerevisiae
jessop Fabre, M., Stovicek, V., Jakociunas, T., Jensen, M. K., Keasling, J. D.
Topologies of Phosphorylation Cycles As Insulation Devices
Shah, R., Del Vecchio, D.
Open Vectoreditor: Freely Open-Source Javascript Web Application for DNA Visualization, Annotation, and Editing
LaFrance, S., Plahar, H., Hillson, N. J., Coble, J., Rich, T., Nixon, J.
Pooled Assembly, Genotyping and Scoring of Diverse Genomic Libraries
Egbert, R., Yu, E., Arkin, A.
Towards an Engineered, Self-Sustained Microbial Ecosystem
Zerfass, C., Christie-Oleza, J., Soyer, O. S.
Bliss: The Black List Sequence Screening Pipeline
Simirenko, L., Hillson, N. J., Deutsch, S., Cheng, J. F.
Mathematical Modelling Determines Post-Segregational Killing Efficacy of Toxin-Antitoxin Systems in Commensal Escherichia coli Nissle 1917
Fedorec, A. J. H., Ozdemir, T., Barnes, C.
Using bacteria to make improved, nacre-inspired materials
Schmieden, D. T., Meyer, A. S.
Front Propagation in an Array of Artificial Cells
Tayar, A.
Library and Model Derived Synthetic Terminators for Yeast
Morse, N., Alper, H.
Characterization of Bacillus Subtilis Colony Biofilms Via Mass Spectrometry and Fluorescence Imaging
Zhao, H., Sweedler, J. V.
Long-term adaptive evolution of highly recoded E. coli strains
Wannier, T. M., Kunjapur, A. M., Church, G. M.
Rewriting the Genome Novel Tools in Synthetic Biology
Clore, A.
The Joint Genome Institute’s Synthetic Biology Internal Review Process
Hillson, N. J., Simirenko, L., Harmon-Smith, M., Visel, A., Rubin, E.
Syntrack: Streamline Complex DNA Assembly Processes
Deutsch, S., Cheng, J. F., Hillson, N. J., Simirenko, L., Bendall, M., Hamilton, M., Tarver, A., Meng, J.
Genome-scale regulatory landscape of Escherichia coli in response to various environmental stresses
Seo, S. W., Palsson, B. O.
Rational Design of High-Number DNA Fragments for Gene Construction
Birla, B.
Engineering Synthetic Systems Inspired By Anaerobic Fungi
Gilmore, S. P., Haitjema, C. H., Henske, J. K., Sexton, J. A., Theodorou, M. K., Valentine, D.
Engineering E. coli for Dual Color Detection of 2,4,6-Trinitrotoluene
Harbaugh, S., Martin, J., Goodson, M., Weinstein, J., Kelley-Loughnane, N.
De novo design of a genetically encoded simple viral-like coat protein for artificial viruses
Hernandez-Garcia, A., Kraft, D., van der Schoot, P., de Vries, R.
Quality and Quantity: Protein Production and Folding Using a Bacterial Protein Secretion System
Rosales, S., Bevington, J., Valdivia, E., Tullman-Ercek, D.