2016 Synthetic Biology: Engineering, Evolution & Design (SEED)

Session: Accepted Posters

Presentations

Integration of an Inducer-Producing Metabolic Pathway in an Artificial Cell
Angelique Coutable, T-Y. Dora Tang, Richard Booth, Adam W. Perriman, Stephen Mann, J. L. Ross Anderson
"Passcode" Kill Switch: Modular Hybrid Transcription Factors for Programmable Biocontainment
Clement T. Y. Chan, James J Collins
Piace: Parallel Integration and Chromosomal Expansion of Biofuels Pathways in E. coli
Garima Goyal, Aram Kang, Nathan J Hillson
Integrated Biocad Toolchain Enables Search for Experimentally Validated Components
Hector Plahar, Mark Forrer, Jacob Coble, William Morrell, Jay D. Keasling, paul D. Adams, Hector Garcia Martin, Nathan J Hillson
Molecular Membrane Engineering for Nanoreactors
Natalie Di Bartolo, Joanna Komar, Mike Jones, Ian Collinson, David Swainsbury
Interactions Between Non Homologous End Joining Repair and Type II Crispr-Cas Systems
Aude Bernheim, Marie Touchon, Eduardo PC Rocha, David Bikard
High-Throughput DNA Assembly Pipeline for Natural Product Discovery in Streptomycetes
Szu-Yi Hsu
Novel Lactate Biosensor for Use in Low Oxygen Conditions
Linda Dekker
Whole Genome Regulator Mutant Library for Expedited Identification of Beneficial Mutations for Enhanced Tolerance Towards Environmental Stress
Alaksh Choudhury, Ryan T Gill, Andrew Garst
Synthetic Speciation: New Technology for Transgene Biocontainment and Pest Biocontrol
Maciej Maselko, Michael J. Smanski, Stephen Heinsch, Sabina Kim
Sequence to Activity Mapping: Computational Approaches and Experimental Tools
Andrew Garst, Marcelo Bassalo, Andrea Halweg-Edwards
Precise Control of Lycopene Production to Enable a Fast-Responding, Minimal-Equipment Biosensor
Mark Styczynski, Monica McNerney
Biophysical Limits of Control Implementations in Synthetic Gene Networks
Aaron J. Dy, James J Collins, Domitilla Del Vecchio
Characterizing RNA Thermometers through Shape-Seq
Optimized Genetic Tools and Overexpression Strategies in the Development of Efficient Production Systems in Photosynthetic Cyanobacteria
Csaba István Nagy, Pauli Kallio, Eva-Mari Aro, Kati Thiel, Hariharan Dandapani, Pekka Patrikainen
Improving RNA Regulator Dynamic Range with Dual Transcriptional Translational Control Mechanism
Alexandra Westbrook
Accelerating Genome Engineering in E. coli: From Single Step Pathway Integration to Trackable Genomic Diversity
Marcelo Bassalo, Andrew Garst, Ryan T Gill
Rational Membrane Engineering Increases E. coli Robustness and Production of Biorenewables
Zaigao Tan, David R. Nielsen, Jacqueline V. Shanks, Yingxi Chen, William Black, Jeremy Lombardo
Automated Design for Synthesis and Assembly
Ernst Oberortner, Nathan J Hillson, Samuel Deutsch, Jan-Fang Cheng
Functional Coordination of Iron-Sulfur Clusters by Selenocysteine
Corwin Miller, Dieter Söll, Markus Broecker, Joanne Ho
Watching the Ribosome Making Peptide Bonds Between Unnatural Amino Acids
Sergey Melnikov, Dieter Söll
Open Vectoreditor: Freely Open-Source Javascript Web Application for DNA Visualization, Annotation, and Editing
Sarah LaFrance, Hector Plahar, Nathan J Hillson, Jacob Coble, Thomas Rich, Joshua Nixon
Mathematical Modelling Determines Post-Segregational Killing Efficacy of Toxin-Antitoxin Systems in Commensal Escherichia coli Nissle 1917
Alex J H Fedorec, Tanel Ozdemir, Chris Barnes
Characterization of Bacillus Subtilis Colony Biofilms Via Mass Spectrometry and Fluorescence Imaging
Huimin Zhao, Jonathan V. Sweedler
Syntrack: Streamline Complex DNA Assembly Processes
Samuel Deutsch, Jan-Fang Cheng, Nathan J Hillson, Lisa Simirenko, Matthew Bendall, Matthew Hamilton, Angela Tarver, John Meng
A Tunable Bacterial Selection System for Engineering Condition-Dependent Protein Function
Katherine E. Brechun, Andrew Woolley, Katja Arndt
Orthogonal Gene Expression: Creating 3 Promoter Libraries Linked to Different Sigma Factors Which Are Orthogonal Between Eachother and Towards the Host
Indra Bervoets, Maarten Van Brempt, Daniel Charlier
Haemoperfusive Membrane Encapsulated Activated Charcoal Packed Column Artificial Kidney in Replacing Haemodialysis
PROF. Nitosh Kumar Brahma
Plasmid GENE Trasfer Invitro into Auxotroph Pheno-Genotypes, F-, Escherichia coli K-12, Generate Hybrid Prototrophs to  Damage Clonal Selectivity
PROF. Nitosh Kumar Brahma
Development of a Multi-Omics Approach to Study Differential Gene Regulation- a Potential Workflow for the Development and Validation of Synthetic Genetic Circuits
Kamal Mandal, Samuel L. Bader, Pankaj Kumar, Dipankar Malakar, David S. Campbell, Bhola Shankar Pradhan, Vaibhav Jain, Robert L. Moritz, Subeer S. Majumdar
Designer Biosensors That Respond to New Small Molecules
Vatsan Raman
Engineering a Growth Sensor to Detect Antigen-Antibody Interactions in Mammalian Cells
Thuy Duong Nguyen, Satoshi Inoue, Yoshihiro Kaku
Random Homology-Aided Transformation for Genome and Plasmid Streamlining
Gabriel A. Suarez, Jeffrey E. Barrick
Synthetic Polyketide Enzymology: Platform for Biosynthesis of Antimicrobial Polyketides
Wen Shan Yew, Maybelle Kho Go, Jantana Wongsantichon, Vivian Wing Ngar Cheung, Jeng Yeong Chow, Robert C. Robinson
Design Space Exploration of the Violacein Pathway in Escherichia coli Based Cell-Free System
Phuc Nguyen, Yong Wu, Shaobin Guo
A General Strategy to Construct Small Molecule Biosensors in Eukaryotes 
Justin Feng
Genome Engineering of Genomically Recoded Escherichia coli enables Multi-Site Non-Standard Amino Acid Incorporation in Cell-Free Synthesized Proteins at High Yield and Purity
Seok Hoon Hong, Roderick G. Davis, Neil Kelleher, Michael C. Jewett
At-Rich Gene Synthesis
Matthew Walsh, Peter A. Carr, Jacquin Niles
Effects of Ribosome Autocatalysis and Negative Feedback in Resource Competition
Fiona Chandra, Domitilla Del Vecchio
Algae Culture in a Photobioreactor NEEDS Specific Growth MEDIA, LIGHT Distribution and Operational Aspects of Chemical Engineering
PROF. Nitosh Kumar Brahma
Protoplast Fusion with the Hydrogen-Oxidizing Bacterium, Cupriavidus Necator
Eric T Holt
Synthetic Speciation: Programmable Transcriptional Activators to Prevent Gene Flow in Sexually-Reproducing Populations
Michael J. Smanski, Maciej Maselko
DNA Component Order Independence Using Insulated Bacterial Promoters
Swati Carr, Jacob Beal, Douglas Densmore
High-Efficiency, Multi-Copy, Markerless Integration of Large Biochemical Pathways in Saccharomyces Cerevisiae 
Youyun Liang, Shuobo Shi, Ee Lui Ang, Mingzi M. Zhang
Engineering Improved Bio-Jet Fuel Tolerance in Escherichia coli Using a Transgenic Library Approach
Timothy Tomko, Mary Dunlop
Assembly of Membrane Encapsulated Nanoreactors
Joanna Komar, Natalie Di Bartolo, David Swainsbury, Mike Jones, Ian Collinson
The JBEI Experiment Data Depot
William Morrell, Mark Forrer, Nathan J Hillson, Hector Garcia Martin, Garrett Birkel, Jason Eads
Electricity-Generating Microbial Communities in Biotrickling Filter-Microbial Fuel Cells for Gaseous Ethyl Acetate Treatment
Chi-Wen Lin, Chih-Hung Wu, Jing-Chen Shih
Tunable Thermal Bioswitches for Noninvasive Genetic Regulation
Mikhail Shapiro, Dan Piraner, Brittany Moser, Mohamad Abedi
Minimum Flow Cytometry Calibration Information (MinFlowCal)
Jacob Beal, Peter McLean, Traci Haddock-Angelli, Brian Teague, Lili Wang, Matthew S. Munson, Sarah Munro, Marc Salit