2015 Synthetic Biology: Engineering, Evolution & Design (SEED)

Session: Poster Session B

Presentations

05:15 PM

Organised Natural Structures Using Synthetic Biology
Georgios Pothoulakis, Tom Ellis
Cell-Cell Communication in Yeast Using Auxin Biosynthesis and Auxin Responsive Crispr Transcription Factors
Nicholas Bolten
Secure Offline Communication of Short Messages with DNA
BIjan Zakeri
Visualising Individual Molecular Features with Fluorescence Digital Molecular Imaging (DMI)
Mingjie Dai, Ralf Jungmann
Massively Parallel Combinatorial Genetics to Probe and Treat Human Diseases
Timothy K. Lu
Tunable Protein Degradation for Control of Synthetic and Endogenous Bacterial Systems
D. Ewen Cameron, James J. Collins
Codon Compression Algorithms for Saturation Mutagenesis
Gur Pines, Andrew Garst, Ryan T Gill
Design and Implementation of Reprogrammable dCas9 Transcription Factor Wires
Miles W. Gander, William Voje
Towards Construction of Programmable Cells to Prevent Infectious Diseases
Allison G. Hoynes-O'Connor, Tae Seok Moon
Considering Dynamic Constraints during Strain Optimization
Sara Amin, Mona Yousofshahi
Genomically Encoded Analog Memory with Precise in Vivo DNA Writing in Living Cell Populations
Fahim Farzadfard
Engineering Bacterial Finite State Machines
John T. Sexton, Jeffrey J. Tabor
Deletion of Glyoxylate Shunt Pathway Genes Results in a 3-Hydroxybutyrate Overproducing Strain of Ralstonia Eutropha
Christopher Brigham, Charles Budde, Jacob Palmer, ChoKyun Rha
Approaches to Improving the Potential of Azotobacter Vinelandii As a Biofertilizer
Brett M. Barney, Lauren Eberhart, Mary Plunkett, Velmurugan Natarajan
Role of Positive and Negative Feedback in Dynamic Expression of E.coli MarA
Tiebin Wang, Mary Dunlop
Incorporating Antimicrobial Peptides As Therapeutic Modules in Engineered Probiotics
Andy Shumaker
An Innovative Cloning Platform for Pathway Engineering
Henrique De Paoli
Synthetic nucleic acid nanostructures regulate native triplex and CRISPR/Cas genomic recombination, restriction, and repair potentials
Faisal Reza
Piace: Parallel Integration and Chromosomal Expansion of Biofuels Pathways in E. coli
Garima Goyal, Jorge Gutierrez, Aram Kang, Nathan J Hillson
Sbol Visual: Standard Schematic Diagrams for Synthetic Genetic Constructs
Robert Sidney Cox, Jacqueline Quinn, Aaron Adler, Jake Beal, Swapnil Bhatia, Yizhi Cai, Joanna Chen, Kevin Clancy, Michal Galdzicki, Nathan J Hillson, Akshay Maheshwari, Chris J. Myers, Umesh P, Matthew Pocock, Cesar Rodriguez, Larisa Soldatova, Guy-Bart Stan, Neil Swainston, Anil Wipat
The Joint Genome Institute's Synthetic Biology Biosecurity DNA Screening Process
Lisa Simirenko, Edward Rubin, Nathan Hillson
A "Basic" Approach to the DNA Assembly Bottleneck: A New Standard Designed for Flexibility, Reliability and Automation
Arturo Casini, Marko Storch, Tom Ellis, Geoff S. Baldwin, Ben Mackrow
Dynamic Control of ERG9 Expression for Improved Amorpha-4,11-Diene Production in Saccharomyces Cerevisiae
Design of Modular Parts for Synthetic Systems Inspired By Anaerobic Fungi
Sean P. Gilmore, Charles H. Haitjema, Jessica A. Sexton, Kevin V. Solomon, John K. Henske, Michael K. Theodorou, Dave Valentine, Veronika Kivenson
Resource Limitations Lead to Hidden Interactions in Gene Networks
Yili Qian, Hsin-Ho Huang, Domitilla Del Vecchio
Seeing the Invisible, and Considering Context: Exploiting Crosstalk to Measure Genetic Construct Activity
Ariel Hecht, Matthew S. Munson, Drew Endy, Marc Salit
Development and Experimental Validation of a Mechanistic Model of in Vitro DNA Recombination
Jack Bowyer
Improvement of DNA Synthesis
Melanie Horlacher, Phillip Kuhn, Korbinian Heil, Katrin Wagner, Claudia Bauer, Thomas Poehmerer, Michael Liss, Axel Trefzer
Transcriptional Bursting in Confined Cell-Free Reactions
Patrick M. Caveney, Michael L. Simpson, Charles Chin, Scott T. Retterer, Charles P. Collier
Thermal Effects on Cell Death Induced By High-Intensity, Ultrashort Electric Pulses
Jiahui Song, Ravindra Joshi
Intracellular Spectral Recompositioning of Light for Improving Photosynthetic Efficiency in the Marine Diatom Phaeodactylum Tricornutum
A Barcoding Strategy Enabling Higher-Throughput Library Screening By Microscopy
Robert Chen
RNA Aptamer-Based Biosensors for Multiplexed in Vitro Diagnostics and Circuit Engineering
Cassandra Burke
Engineering Artificial Mechanosensitive Cells By Combining Cell-Free Expression and Ultrathin Double Emulsion Template
Jin Woo Lee, Kenneth K. Y. Ho, Allen P. Liu
Design Space Exploration of 1,4-Butanediol (BDO) Biosynthesis Pathway in a Cell-Free Transcription-Translation (TX-TL) System
Yong Wu, Stephanie Culler, Julia Khandurina
Structure and Assembly of the Cyanobacterial Carboxysome Matrix
Matthew Niederhuber, Jessica Polka, Pamela A. Silver, Tobias Giessen, Talley Lambert
A Single Plasmid System to Addict Bacteria to Non-Canonical Amino Acids
Drew Tack, Ross Thyer, Jared Ellefson, Andrew D. Ellington
Viral Based Design: Remodeling the Hippo Pathway from Tumor Suppression to Oncogenesis
Matan Shanzer, Nina Reuven, Yosef Shaul
Biomolecular Implementation of a Quasi Sliding Mode Controller Using an Ultrasensitive Cell Signalling Pathway
Rucha Sawlekar, Francesco Montefusco, Declan Bates, Vishwesh Kulkarni
Adaptation of Bacteriophage on Synthetic Transcription Machinery
Daniel Garry, Andrew Ellington
Serine Integrase Recombinational Assembly (SIRA) for Rapid Optimization of Metabolic Pathways
Christine A. Merrick, Sean D. Colloms, Susan J. Rosser
Cellulose Production in Escherichia coli
Gizem Buldum, Alexander Bismarck
Logic Gates As sRNA Dependent Transcriptional Attenuators: A Pause for Thought
Pascoe J Harvey
Crispr-Based Genome Editing Tools: New Applications and Streamlined Workflows
Jonathan Chesnut