2015 Synthetic Biology: Engineering, Evolution & Design (SEED)

Session: Poster Session B

Presentations

05:15 PM

Predictable Design in Biological Engineering: Debugging of Synthetic Circuits By in Vivo and in silico Approaches
Lorenzo Pasotti, Susanna Zucca, Michela Casanova, Nicolo Politi, Ilaria Massaiu, Gabriella Cusella, Paolo Magni
Development and Characterization of a Nucleoside Kinase That Accepts Unnatural Deoxyribonucleoside P, a Part of an Expanded DNA
Mariko F. Matsuura, Ryan W. Shaw, Patricia Moussatche, Diego S. Fajardo, Jennifer D. Moses, Steven A. Benner
Targets of Opportunity : Hypergraph Analysis of the Retrosynthetic Design Space
Brian Olson, Paramvir Dehal
2-Quinoxalinecarboxylic Acid Production in Escherichia coli
Chu-Young Kim
A Synthetic Developmental Circuit to Investigate the Effects of Adhesion
Anton Kan, Ilenne del Valle, Fernan Federici, Tim Rudge, Jim Haseloff
Genome Engineering to Support Rational Design for Metabolic Engineering in Bacillus Subtilis
Anne-Gaelle Planson, Michael Mangan, Philippe Noirot, Etienne Dervyn, Matthieu Jules
Isolation and Charactization of Novel Terpene Synthases from Diverse Metagenomic Libraries
Nathan Crook, Aki Yoneda, Gautam Dantas
Optimization of Cellular Resource Allocation Using Global mRNA Decay
Ophelia Venturelli, Adam P. Arkin
Anti-Virulent Disruption of Pathogenic Biofilms Using Synthetic Quorum-Based Technology
Wen Shan Yew
Interfacing Microbial Styrene Production with a Biocompatible Cyclopropanation Reaction
Stephen Wallace, Emily P. Balskus
Decoupling Growth and Metabolism in Escherichia coli
Victor Chubukov, Jay D. Keasling, Aindrila Mukhopadhyay, Uwe Sauer
In Vivo Characterization of Stress-Responsive Promoters in the Normal and Inflamed Murine Gastrointestinal Tract
Jonathan W. Kotula, Yves Millet, Vincent M. Isabella, Dean Falb, Cami Anderson, Alison Silva, Paul Miller
Mining for Novel Regulatory Noncoding RNA in Bacteria
Jeremy Marcus
Use of Pacific Biosciences Single Molecule Sequencing to Assay DNA Ligase Fidelity
Gregory J. S. Lohman, Dan Cahoon, Thomas F. Knight, Thomas C. Evans, Jr.
Programmable Control of Acetate Metabolism Escherichia coli
Felix Moser
Multiplexed Screens of Olfactory Receptor Binding
Eric M. Jones, Sriram Kosuri
Replicable Single-Stranded DNA Origami
Dongran Han
Spatial and kinetic modeling for targeted fusion proteins
Avi Robinson-Mosher, Nick Brouwers, Jeffrey C. Way, Pamela A. Silver
Simplexes Characterize the Coupling in Gene Expression Due to Competition for Rnap and Ribosomes
Andras Gyorgy, Domitilla Del Vecchio
Metabolic Engineering of Saccharomyces Cerevisiae for Production of Fatty Acid Short-Chain Alkyl Esters
Wei Suong Teo, Matthew Wook Chang
Directed Evolution of CRISPR Endoribonucleases Using Phage-Assisted Continuous Evolution (PACE)
Kevin M. Davis, David R. Liu
Engineered Antibiotic Marker-Free Probiotic Dual Expression Chassis
Elvin Koh, In Young Hwang, Matthew Chang
Developing a DNA Polymerase-Based Biosensor for Neural Recording
Alexandra M. de Paz, Thaddeus R. Cybulski, Konrad P. Kording, George M. Church
Developing Selective Conjugation Reactions for Applications in > Cellular Imaging and Synthetic Biology
Neal Krishna Devaraj
Minmcell: Designing Minimal Microbial Cells
Giuseppe Nicosia, Andrea Patanè, Andrea Santoro, Jole Costanza
Bistable Phenotype Switching to Improve Bioprocess Productivity
Naveen Venayak, Rohil Jaydeep, Radhakrishnan Mahadevan
Engineering of an NADPH/Nadp+ Redox Sensor in Saccharomyces Cerevisiae
Thomas P. B. Pihl
The repeatability of evolutionary trajectories and implications for strain optimization
Aaron W. Miller
A Dicom Extension Supporting Data Acquisition in Synthetic Biology
Iñaki Sainz de Murieta, Matthieu A. Bultelle, Richard I. Kitney
Autonomous DNA Nanosystem for Interrogating Molecular Interactions
Divita Mathur, Eric R. Henderson
From Bacillus Subtilis Gene Expression Decomposition to Synthetic Biology
Olivier Borkowski, Ulrike Mäder, Vincent Sauveplane, Etienne Dervyn, Jan Müntel, Marc Schaffer, Magali Calabre, Stéphane Aymerich, Philippe Noirot, Dörte Becher, Pierre Nicolas, Matthieu Jules
Synthetic Yeast Based Cell Factories for the Production of Plant Natural Colors
Hilde C. Coumou, Pia D. Petersen, Matias M. Mortensen, Rasmus J. N. Frandsen, Ulf Thrane, Finn T. Okkels, Uffe H. Mortensen
Enabling Rapid Protein and Circuit Engineering with High-Throughput Microfluidic Devices
Sebastian J. Maerkl
Modular Engineering of Bacterial Two-Component Systems to Encode Novel Signaling Properties
Ravi U. Sheth, Jeffrey J. Tabor
Controlling Multiple Gene Expression in Saccharomyces Cerevisiae By Optogenetic Switches
Lena Hochrein, Fabian Machens, Katrin Messerschmidt, Bernd Mueller-Roeber
Engineering Acyl Carrier Protein to Enhance Production of Shortened Fatty Acids
Wade M. Hicks, Xueliang Liu, Pamela A. Silver, Jeffrey C. Way
Engineering Caspases with Altered Specificities
Maureen Hill
Realising Efficient and Robust Synthetic Biology Systems Using Systems and Control Engineering
Marios Tomazou, Jordan Ang, Guy-Bart Stan
Engineering Emergent Properties in Synthetic Microbial Communities
Hans C. Bernstein, Alexander S. Beliaev, Jim K. Fredrickson
Engineered Probiotics That Detect and Kill the Human Pathogen Vibrio Cholerae
Ning Mao, D. Ewen Cameron, James J. Collins
Construction of Gamma-Aminobutyric Acid Producing Recombinant Escherichia coli By Introduction of Synthetic Scaffolds
Design Principles of Protein Organelles
David Savage
A 3-D Printed Hardware Platform for Quantitatively Characterizing the Performance Features of Diverse Optogenetic Transcriptional Regulatory Systems in E. coli and S. Cerevisae
Evan J. Olson, Karl P. Gerhardt, Prabha Ramakrishnan, Sebastian M. Castillo-Hair, Felix Ekness, Lucas A. Hartsough, Brian P. Landry, Jeffrey J. Tabor
Development and Characterization of the Peroxisome for Metabolic Engineering
Zachary N. Russ, William C. DeLoache
Feedback Control of Synthetic Genetic Circuits for the Mitigation of Resource Competition
Abdullah Hamadeh, Domitilla Del Vecchio
Paper-Based Synthetic Gene Networks
Keith Pardee, Alex Green, Tom Ferrante, Ewen Cameron, AJay DaleyKeyser, Nina Donghia, James J. Collins
On the Engineering of Effective Biological Computations
Jacob Beal
Modelling Population Cell Cycle Heterogeneity to Deconvolute Population-Level Measurements
Melchior du Lac
Reconstructing a Plant Hemicellulose Biosynthetic Pathway in the Heterologous Fungal Host Pichia Pastoris
Gabriel Levesque-Tremblay, Alex Schultink Alex, Nassim Mansoori, Markus Pauly
Low-Cost Healthcare Diagnostics By Directed Evolution of Peptide Receptors in Yeast
Sarah Stainbrook