2015 Synthetic Biology: Engineering, Evolution & Design (SEED)

Session: Poster Session B

Presentations

05:15 PM

Low-Cost Healthcare Diagnostics By Directed Evolution of Peptide Receptors in Yeast
Sarah Stainbrook
A "Basic" Approach to the DNA Assembly Bottleneck: A New Standard Designed for Flexibility, Reliability and Automation
Arturo Casini, Marko Storch, Tom Ellis, Geoff S. Baldwin, Ben Mackrow
Sbol Visual: Standard Schematic Diagrams for Synthetic Genetic Constructs
Robert Sidney Cox, Jacqueline Quinn, Aaron Adler, Jake Beal, Swapnil Bhatia, Yizhi Cai, Joanna Chen, Kevin Clancy, Michal Galdzicki, Nathan J Hillson, Akshay Maheshwari, Chris J. Myers, Umesh P, Matthew Pocock, Cesar Rodriguez, Larisa Soldatova, Guy-Bart Stan, Neil Swainston, Anil Wipat
Synthetic nucleic acid nanostructures regulate native triplex and CRISPR/Cas genomic recombination, restriction, and repair potentials
Faisal Reza
Incorporating Antimicrobial Peptides As Therapeutic Modules in Engineered Probiotics
Andy Shumaker
Approaches to Improving the Potential of Azotobacter Vinelandii As a Biofertilizer
Brett M. Barney, Lauren Eberhart, Mary Plunkett, Velmurugan Natarajan
Engineering Bacterial Finite State Machines
John T. Sexton, Jeffrey J. Tabor
Considering Dynamic Constraints during Strain Optimization
Sara Amin, Mona Yousofshahi
Design and Implementation of Reprogrammable dCas9 Transcription Factor Wires
Miles W. Gander, William Voje
Tunable Protein Degradation for Control of Synthetic and Endogenous Bacterial Systems
D. Ewen Cameron, James J. Collins
Visualising Individual Molecular Features with Fluorescence Digital Molecular Imaging (DMI)
Mingjie Dai, Ralf Jungmann
Cell-Cell Communication in Yeast Using Auxin Biosynthesis and Auxin Responsive Crispr Transcription Factors
Nicholas Bolten
Design of Modular Parts for Synthetic Systems Inspired By Anaerobic Fungi
Sean P. Gilmore, Charles H. Haitjema, Jessica A. Sexton, Kevin V. Solomon, John K. Henske, Michael K. Theodorou, Dave Valentine, Veronika Kivenson
Modelling Population Cell Cycle Heterogeneity to Deconvolute Population-Level Measurements
Melchior du Lac
Paper-Based Synthetic Gene Networks
Keith Pardee, Alex Green, Tom Ferrante, Ewen Cameron, AJay DaleyKeyser, Nina Donghia, James J. Collins
Development and Characterization of the Peroxisome for Metabolic Engineering
Zachary N. Russ, William C. DeLoache
Design Principles of Protein Organelles
David Savage
Engineered Probiotics That Detect and Kill the Human Pathogen Vibrio Cholerae
Ning Mao, D. Ewen Cameron, James J. Collins
Realising Efficient and Robust Synthetic Biology Systems Using Systems and Control Engineering
Marios Tomazou, Jordan Ang, Guy-Bart Stan
Engineering Acyl Carrier Protein to Enhance Production of Shortened Fatty Acids
Wade M. Hicks, Xueliang Liu, Pamela A. Silver, Jeffrey C. Way
Modular Engineering of Bacterial Two-Component Systems to Encode Novel Signaling Properties
Ravi U. Sheth, Jeffrey J. Tabor
Synthetic Yeast Based Cell Factories for the Production of Plant Natural Colors
Hilde C. Coumou, Pia D. Petersen, Matias M. Mortensen, Rasmus J. N. Frandsen, Ulf Thrane, Finn T. Okkels, Uffe H. Mortensen
From Bacillus Subtilis Gene Expression Decomposition to Synthetic Biology
Olivier Borkowski, Ulrike Mäder, Vincent Sauveplane, Etienne Dervyn, Jan Müntel, Marc Schaffer, Magali Calabre, Stéphane Aymerich, Philippe Noirot, Dörte Becher, Pierre Nicolas, Matthieu Jules
A Dicom Extension Supporting Data Acquisition in Synthetic Biology
Iñaki Sainz de Murieta, Matthieu A. Bultelle, Richard I. Kitney
Predictable Design in Biological Engineering: Debugging of Synthetic Circuits By in Vivo and in silico Approaches
Lorenzo Pasotti, Susanna Zucca, Michela Casanova, Nicolo Politi, Ilaria Massaiu, Gabriella Cusella, Paolo Magni
Autonomous DNA Nanosystem for Interrogating Molecular Interactions
Divita Mathur, Eric R. Henderson
The repeatability of evolutionary trajectories and implications for strain optimization
Aaron W. Miller
Bistable Phenotype Switching to Improve Bioprocess Productivity
Naveen Venayak, Rohil Jaydeep, Radhakrishnan Mahadevan
Developing Selective Conjugation Reactions for Applications in > Cellular Imaging and Synthetic Biology
Neal Krishna Devaraj
Directed Evolution of CRISPR Endoribonucleases Using Phage-Assisted Continuous Evolution (PACE)
Kevin M. Davis, David R. Liu
Spatial and kinetic modeling for targeted fusion proteins
Avi Robinson-Mosher, Nick Brouwers, Jeffrey C. Way, Pamela A. Silver
Use of Pacific Biosciences Single Molecule Sequencing to Assay DNA Ligase Fidelity
Gregory J. S. Lohman, Dan Cahoon, Thomas F. Knight, Thomas C. Evans, Jr.
Interfacing Microbial Styrene Production with a Biocompatible Cyclopropanation Reaction
Stephen Wallace, Emily P. Balskus
Optimization of Cellular Resource Allocation Using Global mRNA Decay
Ophelia Venturelli, Adam P. Arkin
A Synthetic Developmental Circuit to Investigate the Effects of Adhesion
Anton Kan, Ilenne del Valle, Fernan Federici, Tim Rudge, Jim Haseloff
Targets of Opportunity : Hypergraph Analysis of the Retrosynthetic Design Space
Brian Olson, Paramvir Dehal
Engineering of an NADPH/Nadp+ Redox Sensor in Saccharomyces Cerevisiae
Thomas P. B. Pihl
Logic Gates As sRNA Dependent Transcriptional Attenuators: A Pause for Thought
Pascoe J Harvey
Serine Integrase Recombinational Assembly (SIRA) for Rapid Optimization of Metabolic Pathways
Christine A. Merrick, Sean D. Colloms, Susan J. Rosser
Biomolecular Implementation of a Quasi Sliding Mode Controller Using an Ultrasensitive Cell Signalling Pathway
Rucha Sawlekar, Francesco Montefusco, Declan Bates, Vishwesh Kulkarni
A Single Plasmid System to Addict Bacteria to Non-Canonical Amino Acids
Drew Tack, Ross Thyer, Jared Ellefson, Andrew D. Ellington
Design Space Exploration of 1,4-Butanediol (BDO) Biosynthesis Pathway in a Cell-Free Transcription-Translation (TX-TL) System
Yong Wu, Stephanie Culler, Julia Khandurina
RNA Aptamer-Based Biosensors for Multiplexed in Vitro Diagnostics and Circuit Engineering
Cassandra Burke
Intracellular Spectral Recompositioning of Light for Improving Photosynthetic Efficiency in the Marine Diatom Phaeodactylum Tricornutum
Thermal Effects on Cell Death Induced By High-Intensity, Ultrashort Electric Pulses
Jiahui Song, Ravindra Joshi
Improvement of DNA Synthesis
Melanie Horlacher, Phillip Kuhn, Korbinian Heil, Katrin Wagner, Claudia Bauer, Thomas Poehmerer, Michael Liss, Axel Trefzer
Seeing the Invisible, and Considering Context: Exploiting Crosstalk to Measure Genetic Construct Activity
Ariel Hecht, Matthew S. Munson, Drew Endy, Marc Salit
Codon Compression Algorithms for Saturation Mutagenesis
Gur Pines, Andrew Garst, Ryan T Gill
Transcriptional Bursting in Confined Cell-Free Reactions
Patrick M. Caveney, Michael L. Simpson, Charles Chin, Scott T. Retterer, Charles P. Collier
Development and Experimental Validation of a Mechanistic Model of in Vitro DNA Recombination
Jack Bowyer