5th Conference on Constraint-Based Reconstruction and Analysis (COBRA 2018)

Session: Poster Session

Presentations

06:00 PM

Improving High Throughput Genome-Scale Metabolic Model Reconstruction and Validation with Tnseq Data Using Modelseed 2
Multiple Reconstructions of P. Putida for Metabolic Engineering Applications
Genome Scale Metabolic Model Assisted Strain Designs for Itaconic Acid Production in Yeast
MLProScape: Machine Learning (ML) Based Method for Engineering Enzymes Faster By Modeling Protein Fitness Landscape (ProScape)
Genome-Scale Constraint-Based Metabolic Modeling and Analysis of Cryptoccocus Curvatus
Leveraging a Clostridium Difficile Genre and Metagenomics to Identify Candidate Probiotic Bacterial Strains
Identifying Orphan Enzymes in Pseudomonas Putida Using Cobra-Based Methods
Model-Guided Engineering of Cyanobacteria for Improved Biofuel Production
Exploring the Metabolic Role of Multidrug-Resistance Efflux Pumps in Salmonella Typhimurium
Developing and Evaluating Integrated Metabolic Regulatory Models for Microbial Life
The genetic basis for adaptation of model-designed syntrophic co-cultures
Implementing and Evaluating a Gaussian Mixture Framework for Identifying Gene Function from Tnseq Data
Genome-Scale Flux Elucidation in the Fast-Growing Cyanobacterium Synechococcus Elongatus Utex 2973
Utilizing RNA-Seq Data in Bayesian Estimation of Gene Activity States
A Machine Learning-Empowered Kinetic Reconstruction of E. coli Metabolism
Predicting Shifts in Cardiomyocyte Metabolism during Heart Failure
Effective Visualization for Investigating Elementary Flux Modes in Genome-Scale Metabolic Models
Gapseq: A Novel Approach for in silico Prediction and Analysis of Bacterial Metabolic Pathways and Genome-Scale Networks
Genome-Scale Metabolic Model of Chromochloris, an Emerging Model Organism for Sustainable Fuel Production
Kinetic Model of Clostridium Beijerinckii Based on Phenotypic States Superposition
Systems Approaches to Identify Metabolite Signatures in Placental Development
Sbmltools: A Sbml Integration Tool for Kbase
Sammi: An Interactive, Semi-Automated Tool for the Illustration and Visualization of Metabolic Networks
A Multi-Omics Investigation Unveiling the Tiered Regulation of Breast Cancer Cell Metabolism
Toward a Whole-Cell Model of Human Embryonic Stem Cells: A Composable Model of Metabolism Built on a Scalable Framework for Integrating Multiple Pathway Submodels
Enzyme Multicollinearity in Genome-Scale Metabolic Models Revealed By an Efficient Coupling Algorithm
Metabolic Modeling of a Model Diatom
Essential Metabolism for a Minimal Cell - Poster
Automated Reconstruction, Evaluation and Comparison of Diverse Genome Scale Fungal Models
Tailoring a Metabolic Model for CHO Cell-Line By Integrating Data-Inferred Metabolic Activities
Thermodynamic Metabolic Flux Analysis with Consistent Handling of Errors in the Estimates from the Component Contribution Method
Dynamic FBA with Time-Course Transcriptomics
Developement and Application of Constraint-Based Modeling Methods to Study Vulnerabilities Associated to Lipid Metabolism in Prostate Cancer
Modelling of Cell Metabolism to Reduce the Lactate Generation in CHO Cell Cultures
Genetic Optimization Algorithm for Metabolic Engineering Revisited
Metabolic Supply and Demand Constrain Optimal Regulatory Strategies: Structural Evidence from the E coli Small Molecule Regulatory Network
Grid-Based Computational Methods for the Design of Constraint-Based Parsimonious Chemical Reaction Networks to Simulate Metabolite Production: Gridprod
Selective Metabolic Vulnerabilities in Multiple Myeloma
Characterizing and Ranking Computed Metabolic Engineering Strategies
Constraint-Based Modeling Reveals the Distinct Metabolic Potential in Gut Microbiomes of Inflammatory Bowel Disease Patients with Dysbiosis
Deconvoluting Independent Regulatory Signals in the Escherichia coli Transcriptome
Elementary Mass Action Stoichiometric Simulation Models Predict Non-Negligible Concentrations of Enzyme-Bound Metabolites
New Methods to Constrain Genome Scale Models with Stable Isotope Labeling Data
Metabolic Network Reconstruction for the Pan-Genome: A Scalable Method to Get High-Quality Metabolic Models across the Tree of Life
Constraint-Based Modeling of Allelic Variation Mechanistically Links Genome-Wide Associations
A Systematic Assessment of Current Genome-Scale Metabolic Reconstruction Tools
An Integrated COBRA-PBPK Model to Study Interactions between the Gut Microbiome and the Brain in Autism
Untangling Dynamic Protein Behaviour with Rule-Based Modelling and Sensitivity Analysis
Exploring Biosynthetic Pathways for the Production of Five Methyl Ethyl Ketone Precursors
Optfill: A Novel Optimization-Based Tool to Automate the Gapfilling of Genome-Scale Metabolic Models