5th Conference on Constraint-Based Reconstruction and Analysis (COBRA 2018)

Session: Poster Session

Presentations

06:00 PM

Predicted Responses of a Large-Scale Pseudomonas Putida KT2440 Kinetic Metabolic Model to Several Single-Gene Knockouts Are Consistent with Experimental Observations
Development of an Accelerated Workflow for Parameterizing Kinetic Models of Metabolism
Mighty Morphing Metabolic Models: Leveraging Manual Curations for Automatic Metabolic Reconstruction of Clades
Metabolic Network Reconstruction of Treponema Pallidum Spp. Pallidum
Thermodynamics As an Optimization Goal for Metabolism: Prediction of Metabolite Levels, Rate Constants and Post-Translational Regulation
A Multiobjective Strain Design Platform for Modular Cell Engineering
Genome Scale Metabolic Modeling and Analysis of Clostridium Difficile
Reconciling Barseq Datasets for Z. Mobilis Using a Genome-Scale Metabolic Model
Laboratory Evolution Reveals a Two-Dimensional Rate-Yield Tradeoff in Microbial Metabolism
Template of Metabolic Reprogramming in Cancer and Healthy Cells for Inferring Oncogenes
Constructing a High Quality Genome-Scale Metabolic Network for Streptomyces Lividans TK24
Comparative Genomics and Network Modeling of Parasites
Multiomics Integration for Prediction of Complex Metabolic Phenotypes
Implementation and Application of a New Combined Stoichiometric and Thermodynamic Flux Balance Analysis
Construction of a Dynamic Flux Balance Analysis Model for Streptococcus Gordonii
Fine Tuning Thresholds to Facilitate Integration of Transcriptomics Data
Mgpipe: A Toolbox for Investigating Metagenomics Data through Personalized Microbiota Metabolic Models
Erythrodb: A Multi-Omic Visual Knowledge Base for the Human Red Blood Cell
Computational Pathway Design for Funneling Lignin Intermediates to Aromatic Products
Miren: An Optimization Tool for Data-Driven Discovery of Global Regulatory Phenomena Used to Elucidate the Heat Stress Response Mechanism in Rice Seed
COBRA.jl - Gearing up for the huge scale
Modeling of Potentially Virulence-Associated Metabolic Pathways in Pseudomonas Aeruginosa PA14 Including Experimental Verification
Genome-Scale Metabolic Modeling of Actinomycetes for Secondary Metabolites Production
Probabilistic Metabolic Network Reconstruction: A Modular Approach to Integrate Omics Data and Represent Uncertainty
Systematic Reduction of Genome-Scale Models for the Study of Metabolic Phenotypes of Human Cells
Representation of ME-Models in Sbml
A Distance Measure for Heterogeneity Using Genome Scale Metabolic Networks
Identification and Analysis of Bacterial Genomic Metabolic Signatures in the Department of Energy's Systems Biology Knowledgebase
Etfl: A Formulation of ME-Models Accounting for Expression and Thermodynamics in Constraint-Based Models
Genome Scale Metabolic Analysis of the Lactobacillus Genus with a Focus on Probiotic Strains
Genome-Scale Metabolic Reconstructions for Phylogeny?
Bayesian Inference of Metabolic Kinetics from Genome-Scale Multiomics Data
Determination of CHO Biomass Composition
A Metabolic Reconstruction of Lactobacillus Reuteri and Analysis of Its Potential As a Cell Factory
Identification of the Enzymes Responsible for Diverse Phenotypic States of Yeast Lipid Metabolism Using Comprehensive Mechanistic Models
Towards a Metabolic and Expression Model of the Metabolically Versatile Bacterium Rhodopseudomonas Palustris
Cobrapy: A Solid Foundation for a Diverse Python Metabolic Modeling Community
Medusa: A Software Package for Construction and Analysis of Ensembles of Metabolic Networks
Bofdat: Generating Biomass Objective Function for Constraint-Based Metabolic Models from Experimental Data
Models Constrained with Transcriptomics or Proteomics Data Generate Discordant Predictions
Metabolic Analysis of Nitrogen Fixation in the Soybean Micro-Symbiont Sinorhizobium Fredii Using Constraint-Based Modeling
A Computational Knowledge-Base Elucidates the Response of Staphylococcus Aureus to Different Media Types
Describing the Glucose-Lactate Consumption Rate during Expansion and Osteogenic Differentiation of Human Bone Marrow Derived Mesenchymal Stem Cells: A Premise for Building a Systems Biology Model of Osteogenesis Using Metabolomics Analysis
Towards a Genome-Wide Transport Systems Encoding Genes Tracker
A Deep Dive into False Positive Gene Essentiality Predictions with Modeling and Multi-Omics Analysis
Computational Modeling of Ostrecoccus Tauri Central Metabolism Based on Statistical Thermodynamics
Metabolic Chaos during Microbial Stress Responses
The Strain Optimization API: A Flexible Strain Design Formalism for an Automated High-Throughput Industrial Pipeline
Elucidating the Metabolic Rewiring of Pluripotent Stem Cells during Differentiation into Adult Progenitors Using an Updated and Enzyme-Constrained Human Genome-Scale Model
System-Level Examination of Metabolism in Rhizosphere Grown Burkholderiales