2015 Synthetic Biology: Engineering, Evolution & Design (SEED)

Session: Poster Session A

Presentations

05:30 PM

Engineering Light- and Pharmacologically Triggered Extracellular Biological Switches
Maximilian Hörner, Natascha Hotz, Beate Kaufmann, Raphael Gübeli, Erik Christen, Hildegard Büning, Dirk Grimm, Matias D. Zurbriggen, Wilfried Weber
Standardized Design Description Language for Synthetic Biological Constructs - Sbol Visual
Jacqueline Quinn, Aaron Adler, Aaron Adler
Facilitating Unconventional Yeast Engineering for Biorenewables Production
Mingfeng Cao, Meirong Gao
Engineering a Synthetic Regulon in Saccharomyces Cerevisiae for Efficient Xylose Utilization
Venkatesh EndalurGopinarayanan
Evolving Around the Genetic Switches and Circuits
CX1: A Web-Based Application for Augmenting Open Synthetic Biology Laboratory Automation
Aaron Berliner, Maxwell Bates, Dorothy Silverman, Andrew Hessel
A Rule-Based Library for the Verification and Modification of Synthetic DNA Sequences
Ernst Oberortner, Samuel Deutsch, Jan-Fang Cheng, Nathan J Hillson
The Effect of Cellular Noise on MSC Cell Fate Decisions
Tara Deans, Alec Lam
Characterization of Crispri Dynamics Using Optogenetics and Mathematical Modeling
Sebastian M. Castillo-Hair, Jeffrey J. Tabor, Oleg Igoshin
Domesticating the Genome of a Naturally Transformable Bacterium
Brian A. Renda, Gabriel A. Suarez, Aurko Dasgupta, Dacia Leon, Jeffrey E. Barrick
Quantitative Gene Circuits and Computationally Designed Transcriptional Sensors in Plants
Regulation of Biomass Degrading Enzymes in Anaerobic Gut Fungi and Their Application in Synthetic Co-Culture Systems
John K. Henske, Kevin V. Solomon, Sean P. Gilmore, Jessica A. Sexton, Michael K. Theodorou
Synthetic RNA Networks for Sophisticated in Vivo Computation
Alexander A. Green, Jongmin Kim, Mario Teichmann, Pamela A. Silver, James J. Collins
Cell-Free Systems for Synthetic Biology
Michael C. Jewett
Optogenetic Regulation of Proteolysis Using an Engineered Light-Switchable Split-Tev Protease
Karl Gerhardt, Jeff Tabor
Upgrading the Alkane Precursor Pool through Thioesterase Engineering
Marika Ziesack, Brendon Dusel, Jeffrey C. Way, Pamela A. Silver
Crispathbrick: Modular Combinatorial Assembly of Type II-a Crispr Arrays for dCas9-Mediated Multiplex Transcriptional Repression in E. coli
Ö. Duhan Toparlak, Sanjay Guleria, Matthew Lebovich, Jessica T. Stieglitz, Jacob A. Englaender
Complex Design, Simple Implementation: The Development of Red Light-Regulated Nuclear Protein Shuttling and Enzyme-Free DNA Assembly
Hannes M. Beyer, Samuel Juillot, Kathrin Herbst, Uwe Straehle, Wilfried Weber, Matias D. Zurbriggen, Patrick Gonschorek, Sophia L. Samodelov, Eberhard Schaefer, Winfried Roemer, Ferenc Nagy, Konrad Mueller
Epathoptimize: A Combinatorial Approach for Transcriptional Balancing of Metabolic Pathways
Daniel Lachance, Victoria Vernacchio, Matthew Lebovich, Abhijit Shirke, Victor Schultz
Engineering Transcriptional Regulator Effector Specificity Using Computational Design and in Vitro Rapid Prototyping: Developing a Vanillin Sensor
Emmanuel L.C. de los Santos, Joseph T. Meyerowitz, Stephen L. Mayo
Logic Gates for Engineering Programmable Interactions in Microbial Consortia
Alex Beliaev, Ryan McClure, Hans C. Bernstein
Engineering Bacteriophages for Specific Bacterial Targeting
Robert J. Citorik, Timothy K. Lu, Mark Mimee
Precision Expression Control in Bacteroides Thetaiotaomicron, a Human Commensal Bacterium
Mark Mimee, Timothy K. Lu, Alex C. Tucker
Implementation of Synthetic Metabolic Pathways for the Production of 2,4-Dihydroxybutyric Acid
Thomas Walther, Clément Auriol, Christopher Topham, Romain Irague, Isabelle Andre, Magali Remaud-Simeon
The Directed Evolution of Halogenases for Late-Stage Functionalization of Bioactive Molecules
James Payne, Mary Andorfer, Landon Durak, Kyle Kunze, Catherine Poor, Duo-Sheng Wang, Jared Lewis
A General Method for Sensing Small Molecules in Eukaryotes
Justin Feng
Optimizing heterologous pathways in mammalian cells via competitive splicing
Ryan Richardson, Wade Hicks, Jeffrey C. Way, Pamela A. Silver
Small Molecule–Triggered Cas9 Protein with Reduced Off-Target Cleavage
Kevin M. Davis, David R. Liu
New Promoters to Improve Heterologous Protein Production in Penicillium chrysogenum
Fabiola Polli, Roel A.L. Bovenberg, Arnold J.M. Driessen
An optogenetic system for nuclear translocation of viral nanoparticles and tunable gene delivery
Eric J. Gomez, Karl Gerhardt, Justin Judd, Jeffrey J. Tabor
Synthetic DNA Delay Circuits for Temporal Coordination
Dominic Scalise, Dylan Howie
Probabilistic Design of RNA Based Genetic Components: Next Generation Rgr Devices
William Voje, Miles W. Gander
Automated Statistical Design of Experiments for Metabolic Engineering
Brian Olson, Paramvir Dehal
Construction and Characterization of a Refactored Actinorhodin Biosynthetic Cluster
Sangeeta Nath, Cindi Hoover, Katherine Louie, Benjamin P. Bowen, Jeffrey Kim, Trent Northen, Edward Rubin, Nathan J Hillson, Samuel Deutsch, Jay D. Keasling
New Evidence for the Effect of Human Chromatin on Cas9-Mediated Editing
Rene Davis
Real-Time Optogenetic Control of Intracellular Protein Concentration in Microbial Cell Cultures
Megan McClean, Justin Melendez, Benjamin Oakes, Michael Patel, Marcus Noyes
Heterologous Expression and Characterization of Hybrid Two-Component Systems from Gut Bacteria
Kristina Daeffler
De Novo Designed Toehold Repressors
Paul D. Carlson
Engineering of a High Lipid Producing Yarrowia Lipolytica Strain
Annapurna Kamineni
How to Best Control Gene Expression in Cell Populations in Real-Time
Gianfranco Fiore, Giansimone Perrino, Mario di Bernardo, Diego di Bernardo
Genome Engineering of Genomically Recoded Escherichia coli Enhances Site-Specific Incorporation of Non-Standard Amino Acids in Cell-Free Protein Synthesis
Michael C. Jewett
Expanding Synthetic Biology's Toolkit By in Vitro Evolution: Characterization of a Fast and Uniquely Unnatural Hammerhead Ribozyme
Joseph Koussa, Serdal Kimizialtin, Jack Szostak
An Attempt of Transplantation of Carotenoid Genes from Eukaryote to Prokaryote
Takashi Nakada, Takuro Ito
Control of the Asymmetric Segregation of Proteins at Division Thanks to a Self-Assembling Peptide
Antoine L. Decrulle, Ariel B. Lindner
Reengineering for Robust Photorespiratory Bypass to Improve Photosynthesis and Crop Production
Paul South
Cell-Free Metabolic Engineering for Butanol Production
Ashty Karim, Michael C. Jewett
Geneart® Strings™ DNA Libraries – the Fast and Economic Way of DNA Library Production
Nikolai Netuschil, Claudia Bauer, Tobias Santl, Norbert Greifenegger, Christian Kranz, Michael Liss, Axel Trefzer
High-Throughput Screening of Membrane Transport Proteins in Synthetic Lipid Vesicles
Philip A. Romero, Maen Sarhan, Adam Abate
Design and Construction of a Switchable Bistable Switch in Yeast
Yaoyu Yang
Enabling Multiplex Genome Engineering in Yeast By RNAi and Crispr