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- (645c) Topology-Driven Discovery of Multi-Scale Dynamics in Particulate Gels
Using molecular dynamics simulations, we track the evolution of gel structure as the system is driven through the nonlinear deformation regime [4]. Structural information is extracted using persistent homology, a tool from topological data analysis (TDA) that quantifies features such as loops and voids. These features are mapped to low-dimensional vectors using the Automatic Topologically-Oriented Learning (ATOL) algorithm, which enables analysis of structural changes over time [5,6].
We apply the Vector Auto-Regressive LiNGAM (VARLiNGAM) algorithm to the resulting time series to infer causal relationships between topological features [7,8]. The model identifies both time-lagged and instantaneous interactions, revealing a bidirectional flow of structural influence: large-scale voids drive local bond rearrangements, while microscale structural changes feed back into larger-scale organization. This hierarchical structure-dynamics relationship provides a mechanism-level understanding of how deformation propagates through soft material networks.
The causal model developed in this work captures dynamic, interpretable relationships between physically meaningful structural features. It provides a compact, structured description of system dynamics that can be integrated into control frameworks such as model predictive control (MPC) or reinforcement learning (RL) [9,10]. In doing so, it enables improved monitoring and regulation of soft materials in dynamic process environments.
In summary, we present a scalable, interpretable framework for constructing causal models of multi-scale dynamics in soft particulate systems. The approach links simulation data with dynamic systems modeling and opens new pathways for the control and optimization of structurally complex soft materials.
[1] J. L. Barrat, E. Del Gado, S. U. Egelhaaf, X. Mao, M. Dijkstra, D. J. Pine, S. K. Kumar, et al., “Soft matter roadmap,” J. Phys.: Mater., vol. 7, no. 1, p. 012501, 2023.
[2] J. H. Cho, R. Cerbino, and I. Bischofberger, “Emergence of multiscale dynamics in colloidal gels,” Phys. Rev. Lett., vol. 124, no. 8, p. 088005, 2020.
[3] T. Ohtsuka, C. P. Royall, and H. Tanaka, “Local structure and dynamics in colloidal fluids and gels,” Europhys. Lett., vol. 84, no. 4, p. 46002, 2008.
[4] A. D. Smith, G. J. Donley, E. Del Gado, and V. M. Zavala, “Topological data analysis for particulate gels,” ACS Nano, vol. 18, no. 42, pp. 28622–28635, 2024.
[5] M. Royer, F. Chazal, C. Levrard, Y. Umeda, and Y. Ike, “Atol: measure vectorization for automatic topologically-oriented learning,” in Proc. Int. Conf. Artif. Intell. Stat., Mar. 2021, pp. 1000–1008, PMLR.
[6] F. Chazal, C. Levrard, and M. Royer, “Topological Analysis for Detecting Anomalies in Dependent Sequences: Application to Time Series,” J. Mach. Learn. Res., vol. 25, no. 365, pp. 1–49, 2024.
[7] A. Smith, D. Ghosh, A. Tan, X. Cheng, and P. Daoutidis, “Multi-scale causality in active matter,” Comput. Chem. Eng., vol. 197, p. 109052, 2025.
[8] R. Guo, L. Cheng, J. Li, P. R. Hahn, and H. Liu, “A survey of learning causality with data: Problems and methods,” ACM Comput. Surv., vol. 53, no. 4, pp. 1–37, 2020.
[9] S. Zhu, I. Ng, and Z. Chen, “Causal discovery with reinforcement learning,” arXiv preprint arXiv:1906.04477, 2019.
[10] M. Sader, Y. Wang, D. Huang, C. Shang, and B. Huang, “Causality-informed data-driven predictive control,” IEEE Trans. Control Syst. Technol., 2025.