Complex coacervates, formed through associative phase separation of oppositely charged macromolecules, play essential roles in biological compartmentalization and synthetic materials design. While the driving forces underlying coacervate formation are well-characterized, the mechanisms that stabilize coacervate droplets against coalescence and fusion remain less understood. In this work, we investigate the physicochemical changes that occur when PDDA-ATP coacervates are transferred from their native supernatant to deionized (DI) water — a process that unexpectedly stabilizes the coacervates against further coalescence.
Using molecular dynamics simulations, we quantify ion dynamics and structural organization within the coacervate phase under both conditions. Our results reveal a rapid ejection of more than 50% of small ions (Na⁺ and Cl⁻) from the coacervate into the surrounding DI water, accompanied by a pronounced slowdown in the mobility of the remaining ions within the coacervate phase. We propose that this ion depletion leads to the formation of a kinetically arrested interfacial layer, which acts as a physical barrier to further molecular exchange and coalescence.
This study provides new molecular-level insight into the stabilization mechanisms of complex coacervates in low-salt environments, with implications for understanding phase-separated biological systems and designing robust coacervate-based materials under nonequilibrium conditions.