2025 AIChE Annual Meeting

(137h) Cell-Free Synthetic Virology for Programmable Therapeutics

Authors

Yan Zhang - Presenter, Georgia Institute of Technology
Richard Murray, California Institute of Technology
William Clemons, California Institute of Technology
Antibiotics enable modern medicine. However, their effectiveness is rapidly declining as bacteria evolve resistance mechanisms, often rendering entire classes of antibiotics obsolete. By 2050, antibiotic-resistant infections are projected to cause up to 8.2 million deaths annually worldwide. This crisis is exacerbated by an economically unsustainable model of antibiotic development, driven by a fundamental limitation: chemical antibiotics cannot adapt alongside evolving bacterial threats. To break this cycle, a new approach to antimicrobials is urgently needed – one that is adaptive to pathogen evolution and selective to eliminate only the pathogen within a complex microbiome.

Bacteriophages – viruses that infect bacteria – offer a promising solution. They are pathogen-specific, self-amplifying, and self-limiting when the host ceases to exist. However, current methods for phage production require the cultivation of target pathogens to initiate infection and replication (Figure 1). This imposes significant biosecurity constraints and limits applicability, especially for unculturable or high-risk pathogens.

In this talk, I will illuminate my research vision in cell-free synthetic virology: a host-independent platform for bacteriophage production, engineering, and deployment to address critical challenges in antibiotic resistance and selective microbial control. Building on my past work in reconstituted cell-free gene expression systems (One-Pot PURE), I will illustrate how the same modular, “mix-and-match” workflow can be customized by adjusting transcription-translation machinery, energy regeneration schemes, and tRNA codon-usage pool to mimic various pathogen-specific intracellular environments. This approach enables host-independent synthesis of phages that are currently inaccessible through traditional methods, significantly expanding our ability to produce a broad range of bacteriophages with biomedical relevance.

Together, these efforts define a new frontier in programmable phage biomanufacturing. By decoupling phage production from live host cultivation, this approach provides a scalable, adaptive path toward combating antibiotic resistance and advancing precision microbiome engineering.