2022 Annual Meeting

Session: Computational and systems biology tools for metabolic engineering and cell characterization

Chair

Ross Thyer, University of Texas at Austin

Co-Chairs

Arul Mozhy Varman, Arizona State University
Cong Trinh, University of Tennessee Knoxville

Presentations

12:30 PM

(120a) Are Genome Scale Metabolic Models (GeMs) Fit for Purpose? A Comprehensive Analysis into the Reliability of Chinese Hamster Ovary (CHO) Cell GeMs.
Benjamin Strain, Cleo Kontoravdi, James Morrissey

12:48 PM

(120b) Quantification of Metabolic Differences in Platelets Exposed to Estrogen Using Flux Balance Analysis
Samantha Siska, Cara Sake, Alexander Metcalf, Nanette Boyle, Keith B. Neeves

01:06 PM

(120c) Metabolic Modeling of Eicosapentaenoic Acid (EPA) and Arachidonic Acid (AA) Fatty Acids Using a Cybernetic Framework
Sana Khanum, Shakti Gupta, Mano Maurya, Rubesh Raja, Lina Aboulmouna, Shankar Subramaniam, Doraiswami Ramkrishna, Naseeha Mohammed

01:24 PM

(120d) Design of Diverse, Functional Mitochondrial Targeting Sequences across Eukaryotic Organisms Using Variational Autoencoders
Aashutosh Boob, Huimin Zhao, Airah Zaidi, Nilmani Singh, Xueyi Xue, Li-Qing Chen

01:42 PM

(120e) Next-Flux (Neural-net EXtracellular Trained Flux)
James Morrissey, Benjamin Strain, Cleo Kontoravdi, Pierantonio Facco, Gianmarco Barberi

02:00 PM

(120f) Dgpredictor: Automated Fragmentation Method for Gibbs Energy Change Prediction of Metabolic Reaction and De Novo Pathway Design
Vikas Upadhyay, Costas D. Maranas

02:18 PM

(120g) Multidimensional Resource Allocation Predicts Contrarian Reverse Diauxie Phenotype in Pseudomonas Aeruginosa
Ross P. Carlson, S. Lee McGill, Yeni Yung, Kristopher A. Hunt, Luke Hanley