(186j) Characterization of Double-Stranded DNA on Single-Walled Carbon Nanotubes (SWCNTs)

DNA has been extensively studied due to its versatility as a dispersant of SWCNTs. The specificity and binding affinity of DNA to various analytes has been shown to be strongly sequence dependent. As a result, through modifications of the nucleotide sequence, the DNA conformation on the SWCNT surface can be tailored to suit specific needs for techniques such as single-molecule detection, in vivo imaging, and chirality separation. To date, the majority of research has focused on the interaction between single-stranded DNA and SWCNT surface, with less focus on the nature of the interaction between double-stranded DNA (dsDNA) and SWCNTs. As a result, the exact interaction mechanism governing this type of complex remains strongly debated and largely unknown.

In this study, we employ various biochemical methods to infer the conformation of dsDNA on the surface of SWCNTs. Our methods are based on imaging techniques for identifying DNA-modifying enzyme activity in the presence of dsDNA-SWCNT complexes. Our findings suggest that dsDNA can partially retain its native conformation on the SWCNT surface, and the degree of dsDNA accessibility is strongly sequence dependent. These findings offer new possibilities for SWCNT sensing applications that employ dsDNA, such as the optical detection of DNA-protein interactions.