2013 AIChE Annual Meeting

Session: In Silico Systems Biology: Intracellular Signaling and Gene Regulation II

A critical component of systems biology is the development of in silico approaches to understand systems of interest. Novel uses of in silico methods to understand biological systems, as well as the development of new technologies and algorithms for in silico systems analysis are examined.

Chair

Rudiyanto Gunawan, ETH Zurich

Co-Chair

Neda Bagheri, Northwestern University

Presentations

12:30 PM

(680a) DATA-Driven Reconstruction Of Biological Networks Using A Nonlinear MODEL Formulation
Behrang Asadi, Mano Maurya, Daniel M. Tartakovsky, Shankar Subramaniam

12:48 PM

(680b) Systems Tissue Engineering Approach to Infer Dynamic Transcription Factor Activity Networks Using Large-Scale, Real Time Living Cell Arrays
Michael S. Weiss, Beatriz Penalver Bernabe, Seungjin Shin, Szilard Asztalos, Abigail D. Bellis, Debra Tonetti, Jacqueline Jeruss, Linda J. Broadbelt, Lonnie D. Shea

01:06 PM

(680c) Reconciling Gene Expression Data With Regulatory Network Models – A Stimulon-Based Approach for Integrated Metabolic and Regulatory Modeling of Bacillus Subtilis
José P. Faria, Isabel Rocha, Christopher S. Henry, Ross Overbeek, Ronald C. Taylor, Anne Goelzer, Vincent Fromion, Miguel Rocha

01:24 PM

(680d) Identifying Distinct Gene Regulatory Networks Subtending Catecholaminergic Neuronal Subtypes Contributing to Hypertension Development
James Park, Babatunde A. Ogunnaike, James S. Schwaber, Rajanikanth Vadigepalli

01:42 PM

(680e) A Three-Enzyme Cascade During N-Glycan Branching: the Minimal Module for Ultrasensitivity
Gang Liu, Sriram Neelamegham

02:00 PM

(680f) Circadian Gating of the Mammalian Cell Cycle Restriction Point: A Mathematical Analysis
Jing Su, Michael H. Henson

02:18 PM

(680g) Genome-Wide Conservation Profiling and Size Distribution Analysis of Intergenic Sequences in Prokaryotes Provide Insights to Refine sRNA Searches
Chen-Hsun Tsai, Rick Liao, Michael J. Palumbo, Lydia M. Contreras

02:36 PM

(680h) Balancing Antibiotic Resistant Subpopulation in Enterococcus Faecalis Via a Dual Signal Mating-Sensing and Self-Sensing System
Che-Chi Shu, Anushree Chatterjee, Gary M. Dunny, Doraiswami Ramkrishna, Yuqing Chen, Wei-Shou Hu