2011 Annual Meeting

Session: Model Development for Biomolecular Systems

Chair

Saivenkataramen Jayaraman, Sandia National Laboratories

Co-Chair

Michael R. Shirts, University of Virginia

Presentations

03:15 PM

(743a) Moving Beyond Watson-Crick, a Non-Canonical, Coarse-Grained Model of DNA
Margaret C. Linak, Kevin D. Dorfman

03:32 PM

(743b) Intermediate-Resolution Model for Simulating DNA Structure and Hybridization
Johnny R. Maury-Evertsz, Carol Hall

03:49 PM

(743c) Building DNA Coarse-Grain Potentials for the Modeling of DNA-Peptide Complexes
Jie Chen, Barry Honig

04:06 PM

(743d) Viscoelastic Properties of Bacterial Biofilms Using Coarse-Grained Molecular Dynamics Simulations
Rui Li, Adina E. Draghici, Radhakrishna Sureshkumar

04:23 PM

(743e) A Coarse-Grained Model for the Crystalline Structure of I-Alpha and I-Beta Cellulose Based On Force Matching

04:40 PM

(743f) Extending the CHARMM Force Field to Sphingolipids and Lipids with Polyunsaturated Chains
Jeffery Klauda, Brent Rogaski

04:57 PM

(743g) Protein Folding Simulations with Force Fields Optimized for Secondary Structure Balance and Unfolded State Behavior
Robert B. Best, Jeetain Mittal

05:14 PM

(743h) Abstract: Simulated Mutagenesis of VHH Domain In Explicit Solvent: Free-Energy Landscape and Folding Kinetics for the Mutated Hypervariable H1 Loop
Sai Pooja Mahajan, Fernando Escobedo

05:31 PM

(743i) Hydrophobic Association In a Spherically-Symmetric Water Model
Aviel Chaimovich