2006 AIChE Annual Meeting

Session: In Silico Systems Biology III

A critical component of systems biology is the development of in silico approaches to understand systems of interest. For this session, papers discussing novel uses of in silico methods to understand biological systems, as well as the development of new technologies and algorithms for in silico systems analysis are welcome. Research including experimental work is particularly encouraged.

Chair

Ranjan Srivastava, University of Connecticut

Co-Chairs

Jeffrey D. Varner, Cornell University
Christina Chan, Michigan State University

Presentations

03:15 PM

(284a) Modeling the ErbB Signaling Network in MCF-7 Breast Cancer Cells and Analysis of Ligand-Dependent Responses
Marc R. Birtwistle, Mariko Hatakeyama, Noriko Yumoto, Jan B. Hoek, Boris N. Kholodenko, Babatunde A. Ogunnaike

03:34 PM

(284b) Simulation of Non-Specific Protein-Mrna Interactions in the Eif4f Translation Initiation Factor Complex
James Magee, Jim Warwicker

03:53 PM

(284c) A General Model for Ultrasensitivity Arising from Single Protein Multisite Modifications
Xiaoxia (Nina) Lin, Yuan Gao, Yaoyun Shi, George M. Church

04:12 PM

(284d) Spatial Organization of Egf Receptors and Its Implications for Signaling
Kapil Mayawala, Dionisios G. Vlachos, Jeremy S. Edwards

04:50 PM

(284e) How T Cells Hunt for Antigen in Lymphoid Tissue
Bo Jin, Alan S. Perelson, Arup K. Chakraborty

05:09 PM

(284f) From Ligand Binding to Transcription Activation: Insilico Simulation of Tumor Necrosis Factor-Induced Nuclear Factor Kappa B Activation Using Ibrena Software Package
Gang Liu, Sriram Neelamegham

05:27 PM

(284g) Antigen Quality Regulates Signaling and Degradation in the Immunological Synapse
Jayajit Das, Saso Cemerski, Jason W. Locasale, Phoebe Arnold, Daved Fremont, Paul Allen, Andrey S. Shaw, Arup K. Chakraborty