2006 AIChE Annual Meeting

Session: In Silico Systems Biology II

A critical component of systems biology is the development of in silico approaches to understand systems of interest. For this session, papers discussing novel uses of in silico methods to understand biological systems, as well as the development of new technologies and algorithms for in silico systems analysis are welcome. Research including experimental work is particularly encouraged.

Chair

Jeffrey D. Varner, Cornell University

Co-Chair

Ranjan Srivastava, University of Connecticut

Presentations

12:30 PM

(237a) In Silico Bacterial Cells: from Generalized Coarse-Grained to Genome-Specific Modular Models

Jordan Atlas, Evgeni V. Nikolaev, Michael Shuler

12:50 PM

(237b) Bifurcation Analysis of Stochastic Gene Networks

Howard Salis, Yiannis N. Kaznessis

01:10 PM

(237c) Novel Framework for Identifying Objective Functions of Biological Systems

Erwin P. Gianchandani, Matthew A. Oberhardt, Jong Min Lee, Jason Papin

01:30 PM

(237d) Modelling Amino Acid Metabolism in Mammalian Cells - Towards the Development of a Model Library

Cleo Kontoravdi, Carolyn M. C. Lam, Yih Yean Lee, Danny C. F. Wong, Miranda G. S. Yap, Efstratios N. Pistikopoulos, Athanasios Mantalaris

02:00 PM

(237e) Cell-Cell Crosstalk Potentiates Cell Patterning during Development

Claudiu Giurumescu, Paul W. Sternberg, Anand R. Asthagiri

02:20 PM

(237f) Regulation of the Sh2 Domain-Containing Protein-Tyrosine Phosphatase Shp2 in Receptor Signaling: Kinetic Model and Structure-Based Analysis

Dipak Barua, James R. Faeder, Jason Haugh

02:40 PM

(237g) Molecular Signatures That Differentiate Cancer Subtype and Predict Clinical Outcome

Nathan D. Price, Ilya Shmulevich, Biaoyang Lin, Wei Zhang, Nicole Urban, Charles Drescher, Noa Rappaport