2006 AIChE Annual Meeting
(518b) Temporal Coarse-Graining of Lattice Kinetic Monte Carlo Simulations
Author
[1] G. H. Gilmer and P. Bennema, "Simulation of crystal growth with surface diffusion", J. Appl. Phys. 43, 1347-1360 (1972). [2] G. Gilmer, "Computer models of crystal growth", Science 208, 355-363 (1980). [3] R. M. Ziff, E. Gulari, and Y. Barshad, "Kinetic phase transitions in an irreversible surface-reaction model", Phys. Rev. Letters 56, 2553-2556 (1986). [4] S. M. Auerbach, "Theory and simulation of jump dynamics, diffusion and phase equilibrium in nanopores", Int. Rev. Phys. Chem. 19, 155-198 (2000). [5] P. J. Woolf and J. J. Linderman, "Self organization of membrane proteins via dimerization", Biophys. Chem. 104, 217227 (2003). [6] T. A. J. Duke, N. Le Novere, and D. Bray, "Conformational spread in a ring of proteins: A stochastic approach to allostery", J. Mol. Bio. 308, 541-553 (2001). [7] M. Katsoulakis, A. J. Majda, and D. G. Vlachos, "Coarse-grained stochastic processes for microscopic lattice systems", Proc. Natl. Acad. Sci. 100, 782-787 (2003). [8] M. A. Katsoulakis, A. J. Majda, and D. G. Vlachos, "Coarse-grained stochastic processes and Monte Carlo simulations in lattice systems", J. Comp. Phys. 186, 250-278 (2003). [9] M. A. Katsoulakis and D. G. Vlachos, "Coarse-grained stochastic processes and kinetic Monte Carlo simulators for the diffusion of interacting particles", J. Chem. Phys. 119, 9412-9428 (2003). [10] M. A. Katsoulakis and J. Trashorras, "Information loss in coarse-graining of stochastic particle dynamics", J. Stat. Phys. accepted (2005). [11] A. Chatterjee, D. G. Vlachos, and M. Katsoulakis, "Numerical assessment of theoretical error estimates in coarse-grained kinetic Monte Carlo simulations: Application to surface diffusion", Int. J. Multiscale Comp. Eng. 3, 59-70 (2005). [12] A. Chatterjee, M. A. Katsoulakis, and D. G. Vlachos, "Spatially adaptive grand canonical ensemble Monte Carlo simulations", Phys. Rev. E 71, 0267021-0267026 (2005). [13] D. T. Gillespie, "Approximate accelerated stochastic simulation of chemically reacting systems", J. Chem. Phys. 115, 1716-1733 (2001).